RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 FBXW10Q5XX13 1052 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 C2CD5Q86YS7 1000 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 FMNL3Q8IVF7 1028 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 KBTBD3Q8NAB2 608 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 ZNF274Q96GC6 653 aaPredicted RBP12.27□□□□□ -0.45
USP3-206ENST00000558157 MASTLQ96GX5 879 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 RHOXF2Q9BQY4 288 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 ANKIB1Q9P2G1 1089 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 MYH13Q9UKX3 1938 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 ZNF804BA4D1E1 1349 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 XDHP47989 1333 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 MYO5AQ9Y4I1 1855 aaKnown RBP12.26□□□□□ -0.45
USP3-206ENST00000558157 DLEC1Q9Y238 1755 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 AKR1B15C9JRZ8 316 aaPredicted RBP12.26□□□□□ -0.45
USP3-206ENST00000558157 EIF3HO15372 352 aaKnown RBP eCLIP12.26□□□□□ -0.45
USP3-206ENST00000558157 BBOX1O75936 387 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 CHGBP05060 677 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 PFKFB1P16118 471 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 GPSM2P81274 684 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 STIM1Q13586 685 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 PLCB4Q15147 1175 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 DHX32Q7L7V1 743 aaKnown RBP12.26□□□□□ -0.45
USP3-206ENST00000558157 PAGR1Q9BTK6 254 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 PLEKHA4Q9H4M7 779 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 VEZTQ9HBM0 779 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 FANCLQ9NW38 375 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 DACH1Q9UI36 760 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 ZC3H4Q9UPT8 1303 aaKnown RBP12.26□□□□□ -0.45
USP3-206ENST00000558157 DOCK2Q92608 1830 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 COL1A1P02452 1464 aaPredicted RBP12.26□□□□□ -0.45
USP3-206ENST00000558157 MRPL12P52815 198 aaKnown RBP12.26□□□□□ -0.45
USP3-206ENST00000558157 RASGRF1Q13972 1273 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 CRYMQ14894 314 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 C11orf91Q3C1V1 193 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 MICALCLQ6ZW33 695 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 CCDC51Q96ER9 411 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 CLIC6Q96NY7 704 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 CRACR2AQ9BSW2 395 aa12.26□□□□□ -0.45
USP3-206ENST00000558157 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.26□□□□□ -0.45
USP3-206ENST00000558157 GOLGA6CA6NDK9 693 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 KIAA0754O94854 1291 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 GOLGA6DP0CG33 693 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 GCFC2P16383 781 aaKnown RBP12.25□□□□□ -0.45
USP3-206ENST00000558157 ZNF18P17022 549 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 CHRNA5P30532 468 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 NF2P35240 595 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 SYKP43405 635 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 FNTAP49354 379 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 IRX1P78414 480 aaPredicted RBP12.25□□□□□ -0.45
USP3-206ENST00000558157 GOLGA8FQ08AF8 430 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 GOLGA8DPQ0D2H9 430 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 ZNF569Q5MCW4 686 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 FBXL16Q8N461 479 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 JMYQ8N9B5 988 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 BCAS4Q8TDM0 211 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 JPH2Q9BR39 696 aaPredicted RBP12.25□□□□□ -0.45
USP3-206ENST00000558157 CAPS2Q9BXY5 557 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 GOLGA6AQ9NYA3 693 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 HPSEQ9Y251 543 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 KIF13BQ9NQT8 1826 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 IRS2Q9Y4H2 1338 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 H0YIN7 160 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 ZEB2O60315 1214 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 USP14P54578 494 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 ADKP55263 362 aaKnown RBP12.25□□□□□ -0.45
USP3-206ENST00000558157 WLSQ5T9L3 541 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 ZNF589Q86UQ0 364 aaPredicted RBP12.25□□□□□ -0.45
USP3-206ENST00000558157 TICAM2Q86XR7 235 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 TEX11Q8IYF3 940 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 RUBCNQ92622 972 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 FAM84BQ96KN1 310 aaPredicted RBP12.25□□□□□ -0.45
USP3-206ENST00000558157 GPR101Q96P66 508 aaPredicted RBP12.25□□□□□ -0.45
USP3-206ENST00000558157 DESI2Q9BSY9 194 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 KAT14Q9H8E8 782 aa12.25□□□□□ -0.45
USP3-206ENST00000558157 HOOK1Q9UJC3 728 aaKnown RBP12.25□□□□□ -0.45
USP3-206ENST00000558157 IQSEC3Q9UPP2 1182 aaPredicted RBP12.25□□□□□ -0.45
USP3-206ENST00000558157 DUOX1Q9NRD9 1551 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 GOLGA8KD6RF30 607 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 FECHP22830 423 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 ALDH1B1P30837 517 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 CAVIN4Q5BKX8 364 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 MYSM1Q5VVJ2 828 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 SYNE3Q6ZMZ3 975 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 TMC4Q7Z404 712 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 SPATA5Q8NB90 893 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 ENOX1Q8TC92 643 aaKnown RBP12.24□□□□□ -0.45
USP3-206ENST00000558157 LZTFL1Q9NQ48 299 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 GGA2Q9UJY4 613 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 ATF5Q9Y2D1 282 aaPredicted RBP12.24□□□□□ -0.45
USP3-206ENST00000558157 LEMD3Q9Y2U8 911 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 CLIC4Q9Y696 253 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 SLX4Q8IY92 1834 aa12.24□□□□□ -0.45
USP3-206ENST00000558157 H0YHG0 523 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 PPP6R2O75170 966 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 UFL1O94874 794 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 GRIPAP1Q4V328 841 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 ANO1Q5XXA6 986 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 STYK1Q6J9G0 422 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 TXNRD3Q86VQ6 643 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 VPS37DQ86XT2 251 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms