RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 PATL2C9JE40 543 aaKnown RBP15.22■□□□□ 0.03
LINC00643-202ENST00000553426 MX1P20591 662 aa15.22■□□□□ 0.03
LINC00643-202ENST00000553426 CYP2C19P33261 490 aa15.22■□□□□ 0.03
LINC00643-202ENST00000553426 COPB2P35606 906 aa15.22■□□□□ 0.03
LINC00643-202ENST00000553426 SLC17A8Q8NDX2 589 aa15.22■□□□□ 0.03
LINC00643-202ENST00000553426 NYAP2Q9P242 653 aa15.22■□□□□ 0.03
LINC00643-202ENST00000553426 SOX1O00570 391 aaPredicted RBP15.21■□□□□ 0.03
LINC00643-202ENST00000553426 RASA1P20936 1047 aa15.21■□□□□ 0.03
LINC00643-202ENST00000553426 PDE4BQ07343 736 aa15.21■□□□□ 0.03
LINC00643-202ENST00000553426 TMEM132BQ14DG7 1078 aa15.21■□□□□ 0.03
LINC00643-202ENST00000553426 FAM83BQ5T0W9 1011 aa15.21■□□□□ 0.03
LINC00643-202ENST00000553426 STAP2Q9UGK3 403 aa15.21■□□□□ 0.03
LINC00643-202ENST00000553426 PPP1R9AQ9ULJ8 1098 aa15.21■□□□□ 0.03
LINC00643-202ENST00000553426 ZMYND8Q9ULU4 1186 aaPredicted RBP15.21■□□□□ 0.03
LINC00643-202ENST00000553426 CTDP1Q9Y5B0 961 aaPredicted RBP15.21■□□□□ 0.03
LINC00643-202ENST00000553426 ROBO3Q96MS0 1386 aa15.21■□□□□ 0.02
LINC00643-202ENST00000553426 M0R2C6 588 aa15.2■□□□□ 0.02
LINC00643-202ENST00000553426 VWA5AO00534 786 aa15.2■□□□□ 0.02
LINC00643-202ENST00000553426 COL6A1P12109 1028 aa15.2■□□□□ 0.02
LINC00643-202ENST00000553426 STAT3P40763 770 aa15.2■□□□□ 0.02
LINC00643-202ENST00000553426 KCTD2Q14681 263 aa15.2■□□□□ 0.02
LINC00643-202ENST00000553426 RIOX2Q8IUF8 465 aa15.2■□□□□ 0.02
LINC00643-202ENST00000553426 IFNL3Q8IZI9 196 aa15.2■□□□□ 0.02
LINC00643-202ENST00000553426 ARRDC4Q8NCT1 418 aa15.2■□□□□ 0.02
LINC00643-202ENST00000553426 MMP19Q99542 508 aa15.2■□□□□ 0.02
LINC00643-202ENST00000553426 SLF1Q9BQI6 1058 aa15.2■□□□□ 0.02
LINC00643-202ENST00000553426 NAPBQ9H115 298 aa15.2■□□□□ 0.02
LINC00643-202ENST00000553426 ADAMTS5Q9UNA0 930 aa15.2■□□□□ 0.02
LINC00643-202ENST00000553426 PFASO15067 1338 aa15.19■□□□□ 0.02
LINC00643-202ENST00000553426 F5H6K3 240 aa15.19■□□□□ 0.02
LINC00643-202ENST00000553426 COBLO75128 1261 aa15.19■□□□□ 0.02
LINC00643-202ENST00000553426 TSPY3P0CV98 308 aa15.19■□□□□ 0.02
LINC00643-202ENST00000553426 TSPY8P0CW00 308 aa15.19■□□□□ 0.02
LINC00643-202ENST00000553426 CYBAP13498 195 aa15.19■□□□□ 0.02
LINC00643-202ENST00000553426 KLRC3Q07444 240 aa15.19■□□□□ 0.02
LINC00643-202ENST00000553426 ANKRD45Q5TZF3 282 aa15.19■□□□□ 0.02
LINC00643-202ENST00000553426 PI4K2BQ8TCG2 481 aa15.19■□□□□ 0.02
LINC00643-202ENST00000553426 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.19■□□□□ 0.02
LINC00643-202ENST00000553426 SENP6Q9GZR1 1112 aaPredicted RBP15.19■□□□□ 0.02
LINC00643-202ENST00000553426 EPB41L4AQ9HCS5 686 aaPredicted RBP15.19■□□□□ 0.02
LINC00643-202ENST00000553426 FBXO28Q9NVF7 368 aa15.19■□□□□ 0.02
LINC00643-202ENST00000553426 CLIP2Q9UDT6 1046 aa15.19■□□□□ 0.02
LINC00643-202ENST00000553426 A0A0G2JMZ2 1700 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 DNM1LO00429 736 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 SEPT4O43236 478 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 PRDM1O75626 825 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 TTLL1O95922 423 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 SYN1P17600 705 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 BMP8BP34820 402 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 PPP4R3BQ5MIZ7 849 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 PRPF38AQ8NAV1 312 aaKnown RBP15.18■□□□□ 0.02
LINC00643-202ENST00000553426 OTUD7AQ8TE49 926 aaPredicted RBP15.18■□□□□ 0.02
LINC00643-202ENST00000553426 LRCH3Q96II8 777 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 MAML3Q96JK9 1138 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 GDF15Q99988 308 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 NRBP1Q9UHY1 535 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 SYNPO2Q9UMS6 1093 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 A0A0C4DFX4 3053 aa15.18■□□□□ 0.02
LINC00643-202ENST00000553426 ZNF236Q9UL36 1845 aa15.17■□□□□ 0.02
LINC00643-202ENST00000553426 KBTBD13C9JR72 458 aa15.17■□□□□ 0.02
LINC00643-202ENST00000553426 ZBED4O75132 1171 aa15.17■□□□□ 0.02
LINC00643-202ENST00000553426 LRRC26Q2I0M4 334 aa15.17■□□□□ 0.02
LINC00643-202ENST00000553426 ZMYM1Q5SVZ6 1142 aa15.17■□□□□ 0.02
LINC00643-202ENST00000553426 TRPV1Q8NER1 839 aa15.17■□□□□ 0.02
LINC00643-202ENST00000553426 CRBNQ96SW2 442 aa15.17■□□□□ 0.02
LINC00643-202ENST00000553426 SEC62Q99442 399 aaKnown RBP15.17■□□□□ 0.02
LINC00643-202ENST00000553426 TEX13BQ9BXU2 312 aa15.17■□□□□ 0.02
LINC00643-202ENST00000553426 PRKAG2Q9UGJ0 569 aa15.17■□□□□ 0.02
LINC00643-202ENST00000553426 RLFQ13129 1914 aa15.17■□□□□ 0.02
LINC00643-202ENST00000553426 ALPK3Q96L96 1907 aa15.17■□□□□ 0.02
LINC00643-202ENST00000553426 NDUFB10O96000 172 aa15.16■□□□□ 0.02
LINC00643-202ENST00000553426 IGHA2P01877 340 aa15.16■□□□□ 0.02
LINC00643-202ENST00000553426 MYCNP04198 464 aaPredicted RBP15.16■□□□□ 0.02
LINC00643-202ENST00000553426 MAGEA10P43363 369 aaPredicted RBP15.16■□□□□ 0.02
LINC00643-202ENST00000553426 PPARAQ07869 468 aa15.16■□□□□ 0.02
LINC00643-202ENST00000553426 AAMPQ13685 434 aa15.16■□□□□ 0.02
LINC00643-202ENST00000553426 SNRNP48Q6IEG0 339 aaKnown RBP15.16■□□□□ 0.02
LINC00643-202ENST00000553426 MKL1Q969V6 931 aa15.16■□□□□ 0.02
LINC00643-202ENST00000553426 EVI5LQ96CN4 794 aa15.16■□□□□ 0.02
LINC00643-202ENST00000553426 CEP95Q96GE4 821 aa15.16■□□□□ 0.02
LINC00643-202ENST00000553426 NUP88Q99567 741 aaPredicted RBP15.16■□□□□ 0.02
LINC00643-202ENST00000553426 MTMR4Q9NYA4 1195 aa15.16■□□□□ 0.02
LINC00643-202ENST00000553426 ZNF214Q9UL59 606 aaPredicted RBP15.16■□□□□ 0.02
LINC00643-202ENST00000553426 DIS3Q9Y2L1 958 aaKnown RBP15.16■□□□□ 0.02
LINC00643-202ENST00000553426 IGKV6D-41A0A0C4DH26 115 aa15.15■□□□□ 0.02
LINC00643-202ENST00000553426 PGK2P07205 417 aa15.15■□□□□ 0.02
LINC00643-202ENST00000553426 SLC4A3P48751 1232 aa15.15■□□□□ 0.02
LINC00643-202ENST00000553426 TFAP4Q01664 338 aa15.15■□□□□ 0.02
LINC00643-202ENST00000553426 GJC2Q5T442 439 aaPredicted RBP15.15■□□□□ 0.02
LINC00643-202ENST00000553426 NEDD1Q8NHV4 660 aa15.15■□□□□ 0.02
LINC00643-202ENST00000553426 DDX11Q96FC9 970 aa15.15■□□□□ 0.02
LINC00643-202ENST00000553426 LBHD1Q9BQE6 289 aaPredicted RBP15.15■□□□□ 0.02
LINC00643-202ENST00000553426 TINF2Q9BSI4 451 aa15.15■□□□□ 0.02
LINC00643-202ENST00000553426 UBE2OQ9C0C9 1292 aaKnown RBP15.15■□□□□ 0.02
LINC00643-202ENST00000553426 FEM1BQ9UK73 627 aa15.15■□□□□ 0.02
LINC00643-202ENST00000553426 ISY1Q9ULR0 285 aaKnown RBP15.15■□□□□ 0.02
LINC00643-202ENST00000553426 CNPY2Q9Y2B0 182 aa15.15■□□□□ 0.02
LINC00643-202ENST00000553426 FDX1P10109 184 aa15.14■□□□□ 0.01
LINC00643-202ENST00000553426 RARBP10826 455 aa15.14■□□□□ 0.01
LINC00643-202ENST00000553426 ATN1P54259 1190 aaPredicted RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms