RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 KIF22Q14807 665 aa14.65□□□□□ -0.06
VPS33A-207ENST00000542790 CATSPERGQ6ZRH7 1159 aa14.65□□□□□ -0.06
VPS33A-207ENST00000542790 CTU1Q7Z7A3 348 aaKnown RBP14.65□□□□□ -0.06
VPS33A-207ENST00000542790 SLAIN1Q8ND83 568 aa14.65□□□□□ -0.06
VPS33A-207ENST00000542790 GTF3C2Q8WUA4 911 aaPredicted RBP14.65□□□□□ -0.06
VPS33A-207ENST00000542790 P2RX7Q99572 595 aaKnown RBP14.65□□□□□ -0.06
VPS33A-207ENST00000542790 CNNM2Q9H8M5 875 aa14.65□□□□□ -0.06
VPS33A-207ENST00000542790 ANO2Q9NQ90 1003 aa14.65□□□□□ -0.06
VPS33A-207ENST00000542790 IL17RBQ9NRM6 502 aa14.65□□□□□ -0.06
VPS33A-207ENST00000542790 TCP11L1Q9NUJ3 509 aa14.65□□□□□ -0.06
VPS33A-207ENST00000542790 F5H6K3 240 aa14.64□□□□□ -0.07
VPS33A-207ENST00000542790 WDR46O15213 610 aaKnown RBP14.64□□□□□ -0.07
VPS33A-207ENST00000542790 RAD21O60216 631 aa14.64□□□□□ -0.07
VPS33A-207ENST00000542790 HERVK_113P62684 666 aa14.64□□□□□ -0.07
VPS33A-207ENST00000542790 LACTBP83111 547 aaPredicted RBP14.64□□□□□ -0.07
VPS33A-207ENST00000542790 KLRC3Q07444 240 aa14.64□□□□□ -0.07
VPS33A-207ENST00000542790 COG2Q14746 738 aa14.64□□□□□ -0.07
VPS33A-207ENST00000542790 SPICE1Q8N0Z3 855 aa14.64□□□□□ -0.07
VPS33A-207ENST00000542790 KRT23Q9C075 422 aa14.64□□□□□ -0.07
VPS33A-207ENST00000542790 LSG1Q9H089 658 aaKnown RBP14.64□□□□□ -0.07
VPS33A-207ENST00000542790 STX8Q9UNK0 236 aa14.64□□□□□ -0.07
VPS33A-207ENST00000542790 LAMB1P07942 1786 aa14.64□□□□□ -0.07
VPS33A-207ENST00000542790 BAZ2AQ9UIF9 1905 aaKnown RBP14.64□□□□□ -0.07
VPS33A-207ENST00000542790 CYP21A2P08686 494 aa14.63□□□□□ -0.07
VPS33A-207ENST00000542790 TRDNQ13061 729 aa14.63□□□□□ -0.07
VPS33A-207ENST00000542790 FAM110CQ1W6H9 321 aa14.63□□□□□ -0.07
VPS33A-207ENST00000542790 KIAA1755Q5JYT7 1200 aa14.63□□□□□ -0.07
VPS33A-207ENST00000542790 ANKRD13CQ8N6S4 541 aa14.63□□□□□ -0.07
VPS33A-207ENST00000542790 CD99L2Q8TCZ2 262 aa14.63□□□□□ -0.07
VPS33A-207ENST00000542790 TMEM121BQ9BXQ6 578 aaPredicted RBP14.63□□□□□ -0.07
VPS33A-207ENST00000542790 TANGO6Q9C0B7 1094 aa14.63□□□□□ -0.07
VPS33A-207ENST00000542790 HOXC10Q9NYD6 342 aa14.63□□□□□ -0.07
VPS33A-207ENST00000542790 RBM8AQ9Y5S9 174 aaKnown RBP14.63□□□□□ -0.07
VPS33A-207ENST00000542790 NEDD4P46934 1319 aa14.63□□□□□ -0.07
VPS33A-207ENST00000542790 NMT2O60551 498 aa14.62□□□□□ -0.07
VPS33A-207ENST00000542790 KDM4AO75164 1064 aa14.62□□□□□ -0.07
VPS33A-207ENST00000542790 GNRH1P01148 92 aa14.62□□□□□ -0.07
VPS33A-207ENST00000542790 NOVP48745 357 aa14.62□□□□□ -0.07
VPS33A-207ENST00000542790 PKN2Q16513 984 aaKnown RBP14.62□□□□□ -0.07
VPS33A-207ENST00000542790 CCDC178Q5BJE1 867 aa14.62□□□□□ -0.07
VPS33A-207ENST00000542790 IQCA1Q86XH1 822 aa14.62□□□□□ -0.07
VPS33A-207ENST00000542790 GMCL1P1Q8NEA9 526 aa14.62□□□□□ -0.07
VPS33A-207ENST00000542790 TTC14Q96N46 770 aa14.62□□□□□ -0.07
VPS33A-207ENST00000542790 EFCC1Q9HA90 598 aa14.62□□□□□ -0.07
VPS33A-207ENST00000542790 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.62□□□□□ -0.07
VPS33A-207ENST00000542790 B4E1Z4 1266 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 FLOT1O75955 427 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 NDUFB10O96000 172 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 SLFN13Q68D06 897 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 LBX2Q6XYB7 198 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 DGKHQ86XP1 1220 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 TNS4Q8IZW8 715 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 LRRC47Q8N1G4 583 aaKnown RBP14.61□□□□□ -0.07
VPS33A-207ENST00000542790 GPRC5AQ8NFJ5 357 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 ZSWIM5Q9P217 1185 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 RBPJLQ9UBG7 517 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 MORF4L1Q9UBU8 362 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 TRIM17Q9Y577 477 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 PHIPQ8WWQ0 1821 aa14.61□□□□□ -0.07
VPS33A-207ENST00000542790 FMNL1O95466 1100 aaPredicted RBP14.6□□□□□ -0.07
VPS33A-207ENST00000542790 TOP1P11387 765 aaKnown RBP14.6□□□□□ -0.07
VPS33A-207ENST00000542790 PSMC4P43686 418 aa14.6□□□□□ -0.07
VPS33A-207ENST00000542790 FCGRTP55899 365 aa14.6□□□□□ -0.07
VPS33A-207ENST00000542790 FAM83BQ5T0W9 1011 aa14.6□□□□□ -0.07
VPS33A-207ENST00000542790 RNF20Q5VTR2 975 aa14.6□□□□□ -0.07
VPS33A-207ENST00000542790 OTOP1Q7RTM1 612 aa14.6□□□□□ -0.07
VPS33A-207ENST00000542790 RALYLQ86SE5 291 aaKnown RBP14.6□□□□□ -0.07
VPS33A-207ENST00000542790 ZSCAN10Q96SZ4 725 aaPredicted RBP14.6□□□□□ -0.07
VPS33A-207ENST00000542790 RABGAP1Q9Y3P9 1069 aa14.6□□□□□ -0.07
VPS33A-207ENST00000542790 MYPNQ86TC9 1320 aa14.6□□□□□ -0.07
VPS33A-207ENST00000542790 ATAD5Q96QE3 1844 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 SPDYE16A6NNV3 312 aaPredicted RBP14.59□□□□□ -0.07
VPS33A-207ENST00000542790 E7EWF7 191 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 BMP3P12645 472 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 HOXD10P28358 340 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 SLC1A4P43007 532 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 NECTIN1Q15223 517 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 MB21D1Q8N884 522 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 NCOA7Q8NI08 942 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 GMCL1Q96IK5 515 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 TMEM47Q9BQJ4 181 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 UBAC1Q9BSL1 405 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 PAGR1Q9BTK6 254 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 ARHGAP39Q9C0H5 1083 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 MCOLN1Q9GZU1 580 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 TXNRD2Q9NNW7 524 aa14.59□□□□□ -0.07
VPS33A-207ENST00000542790 SLC27A2O14975 620 aa14.58□□□□□ -0.08
VPS33A-207ENST00000542790 REC8O95072 547 aa14.58□□□□□ -0.08
VPS33A-207ENST00000542790 MCCP23508 829 aa14.58□□□□□ -0.08
VPS33A-207ENST00000542790 PRMT2P55345 433 aa14.58□□□□□ -0.08
VPS33A-207ENST00000542790 ERVK-9P63128 1117 aa14.58□□□□□ -0.08
VPS33A-207ENST00000542790 ERVK-24P63145 666 aa14.58□□□□□ -0.08
VPS33A-207ENST00000542790 CCNA1P78396 465 aa14.58□□□□□ -0.08
VPS33A-207ENST00000542790 CREB3L3Q68CJ9 461 aa14.58□□□□□ -0.08
VPS33A-207ENST00000542790 RCSD1Q6JBY9 416 aa14.58□□□□□ -0.08
VPS33A-207ENST00000542790 FBXO46Q6PJ61 603 aaPredicted RBP14.58□□□□□ -0.08
VPS33A-207ENST00000542790 CCAR1Q8IX12 1150 aaKnown RBP14.58□□□□□ -0.08
VPS33A-207ENST00000542790 NKX2-3Q8TAU0 364 aa14.58□□□□□ -0.08
VPS33A-207ENST00000542790 ANKS1AQ92625 1134 aa14.58□□□□□ -0.08
VPS33A-207ENST00000542790 TRIM47Q96LD4 638 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms