RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 COL9A1P20849 921 aa10.44□□□□□ -0.74
CLSTN3-212ENST00000541770 TLE2Q04725 743 aa10.44□□□□□ -0.74
CLSTN3-212ENST00000541770 LRRC41Q15345 812 aa10.44□□□□□ -0.74
CLSTN3-212ENST00000541770 FAM47AQ5JRC9 791 aa10.44□□□□□ -0.74
CLSTN3-212ENST00000541770 TATDN1Q6P1N9 297 aa10.44□□□□□ -0.74
CLSTN3-212ENST00000541770 TTC6Q86TZ1 520 aa10.44□□□□□ -0.74
CLSTN3-212ENST00000541770 MAGEB6Q8N7X4 407 aa10.44□□□□□ -0.74
CLSTN3-212ENST00000541770 SLC5A4Q9NY91 659 aa10.44□□□□□ -0.74
CLSTN3-212ENST00000541770 SMCHD1A6NHR9 2005 aa10.44□□□□□ -0.74
CLSTN3-212ENST00000541770 CUL9Q8IWT3 2517 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 STRNO43815 780 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 PQBP1O60828 265 aaKnown RBP10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 COBLO75128 1261 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 POLR3DP05423 398 aaPredicted RBP10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 CLTBP09497 229 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 PDE4AP27815 886 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 COG2Q14746 738 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 GRIN2CQ14957 1233 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 SEPT2Q15019 361 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 TJAP1Q5JTD0 557 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 OLFML2BQ68BL8 750 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 LBX2Q6XYB7 198 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 TICAM2Q86XR7 235 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 KBTBD3Q8NAB2 608 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.43□□□□□ -0.745e-6■■■■■ 34.6
CLSTN3-212ENST00000541770 SPATC1LQ9H0A9 340 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 HOXC10Q9NYD6 342 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 TACC3Q9Y6A5 838 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 A0A0G2JMZ2 1700 aa10.43□□□□□ -0.74
CLSTN3-212ENST00000541770 TNFRSF10AO00220 468 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 PGK1P00558 417 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 RARBP10826 455 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 PDE6AP16499 860 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 ITGB8P26012 769 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 SHMT1P34896 483 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 PLCD1P51178 756 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 EPHB4P54760 987 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 SNX17Q15036 470 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 LRRFIP1Q32MZ4 808 aaKnown RBP10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 SLC9C2Q5TAH2 1124 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 ZSCAN25Q6NSZ9 544 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 CERS3Q8IU89 383 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 USP38Q8NB14 1042 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 EVI5LQ96CN4 794 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 EHD4Q9H223 541 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 XPNPEP3Q9NQH7 507 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 TMEM39AQ9NV64 488 aa10.42□□□□□ -0.74
CLSTN3-212ENST00000541770 DNAH12Q6ZR08 3092 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 TCRBV5S4A2TA0A5A2 114 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 FLOT1O75955 427 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 ZFYP08048 801 aaPredicted RBP10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 DNAJB2P25686 324 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 GUCY1A2P33402 732 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 ADD2P35612 726 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 FPGSQ05932 587 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 UBE3CQ15386 1083 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 CCDC129Q6ZRS4 1044 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 RNF180Q86T96 592 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 SHCBP1Q8NEM2 672 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 MAML3Q96JK9 1138 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 MROH8Q9H579 483 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 RAPGEFL1Q9UHV5 662 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 PARP14Q460N5 1801 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 EYSQ5T1H1 3165 aa10.41□□□□□ -0.74
CLSTN3-212ENST00000541770 ZNF532Q9HCE3 1301 aa10.4□□□□□ -0.74
CLSTN3-212ENST00000541770 TMEM265A0A087WTH1 108 aa10.4□□□□□ -0.74
CLSTN3-212ENST00000541770 A0A1W2PRG0 241 aa10.4□□□□□ -0.74
CLSTN3-212ENST00000541770 RAD21O60216 631 aa10.4□□□□□ -0.74
CLSTN3-212ENST00000541770 FCER1AP12319 257 aa10.4□□□□□ -0.74
CLSTN3-212ENST00000541770 SPICE1Q8N0Z3 855 aa10.4□□□□□ -0.74
CLSTN3-212ENST00000541770 ATG4CQ96DT6 458 aa10.4□□□□□ -0.74
CLSTN3-212ENST00000541770 GAS2L1Q99501 681 aaPredicted RBP10.4□□□□□ -0.74
CLSTN3-212ENST00000541770 MMP19Q99542 508 aa10.4□□□□□ -0.74
CLSTN3-212ENST00000541770 ZNF576Q9H609 170 aa10.4□□□□□ -0.74
CLSTN3-212ENST00000541770 PHF24Q9UPV7 400 aa10.4□□□□□ -0.74
CLSTN3-212ENST00000541770 GBF1Q92538 1859 aa10.4□□□□□ -0.75
CLSTN3-212ENST00000541770 MAGEB6P1A0A0J9YX57 407 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 A0A1W2PQ45 241 aaPredicted RBP10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 A0A1W2PQY0 241 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 RNF113AO15541 343 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 IGHA2P01877 340 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 PGK2P07205 417 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 DSG3P32926 999 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 EVX2Q03828 476 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 CCDC85BQ15834 202 aaPredicted RBP10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 TTC22Q5TAA0 569 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 C1orf53Q5VUE5 145 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 MB21D1Q8N884 522 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 SLC44A5Q8NCS7 719 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 LENG1Q96BZ8 264 aaPredicted RBP10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 TIFAQ96CG3 184 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 RIOK1Q9BRS2 568 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 FSD1Q9BTV5 496 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 STARD7Q9NQZ5 370 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 MCM9Q9NXL9 1143 aa10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 BAZ2AQ9UIF9 1905 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-212ENST00000541770 DCDC2CA8MYV0 355 aa10.38□□□□□ -0.75
CLSTN3-212ENST00000541770 TRIM6-TRIM34B2RNG4 842 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms