RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 ZHX3Q9H4I2 956 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 BSDC1Q9NW68 430 aaPredicted RBP15.31■□□□□ 0.04
PTPN1-202ENST00000541713 CCNT1O60563 726 aaKnown RBP15.31■□□□□ 0.04
PTPN1-202ENST00000541713 TPM1P09493 284 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 TECP42680 631 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 TXKP42681 527 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 NAPAP54920 295 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 SPATA1Q5VX52 437 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 NOL10Q9BSC4 688 aaKnown RBP15.31■□□□□ 0.04
PTPN1-202ENST00000541713 ADAMTSL3P82987 1691 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 NKRFO15226 690 aaKnown RBP eCLIP15.3■□□□□ 0.04
PTPN1-202ENST00000541713 PRPF3O43395 683 aaKnown RBP15.3■□□□□ 0.04
PTPN1-202ENST00000541713 MARCH6O60337 910 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 PNMA6AP0CW24 399 aaPredicted RBP15.3■□□□□ 0.04
PTPN1-202ENST00000541713 MATR3P43243 847 aaKnown RBP eCLIP15.3■□□□□ 0.041e-6■■■■□ 23.9
PTPN1-202ENST00000541713 FAM193AP78312 1265 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 NCAPH2Q6IBW4 605 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 MXD3Q9BW11 206 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 GPCPD1Q9NPB8 672 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 ARGLU1Q9NWB6 273 aaPredicted RBP15.3■□□□□ 0.04
PTPN1-202ENST00000541713 TBC1D7Q9P0N9 293 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 GLI3P10071 1580 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 PPP1R3GB7ZBB8 358 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 KIF5CO60282 957 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 CYP27A1Q02318 531 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 UBE4AQ14139 1066 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 NR1I3Q14994 352 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 PARD6BQ9BYG5 372 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 TMEM260Q9NX78 707 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 CCNL1Q9UK58 526 aaPredicted RBP15.3■□□□□ 0.04
PTPN1-202ENST00000541713 SLIT2O94813 1529 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 AKAP11Q9UKA4 1901 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 RFC4P35249 363 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 FUT2Q10981 343 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 BLIDQ8IZY5 108 aa15.3■□□□□ 0.04
PTPN1-202ENST00000541713 LRRC47Q8N1G4 583 aaKnown RBP15.3■□□□□ 0.04
PTPN1-202ENST00000541713 STK36Q9NRP7 1315 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 LMTK3Q96Q04 1460 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 MYH2Q9UKX2 1941 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 ZNF18P17022 549 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 PTPROQ16827 1216 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 TPTE2Q6XPS3 522 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 DTHD1Q6ZMT9 781 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 IL17RBQ9NRM6 502 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 CNTNAP5Q8WYK1 1306 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 COL1A1P02452 1464 aaPredicted RBP15.29■□□□□ 0.04
PTPN1-202ENST00000541713 KCNJ18B7U540 433 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 GYPCP04921 128 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 TXLNAP40222 546 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 KCNJ12Q14500 433 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 KANK3Q6NY19 840 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 COA7Q96BR5 231 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 MACROD2A1Z1Q3 448 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 FAM196BA6NMK8 535 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 MPHOSPH10O00566 681 aaKnown RBP15.29■□□□□ 0.04
PTPN1-202ENST00000541713 RPN1P04843 607 aaKnown RBP15.29■□□□□ 0.04
PTPN1-202ENST00000541713 SARSP49591 514 aaKnown RBP15.29■□□□□ 0.04
PTPN1-202ENST00000541713 ASIC1P78348 528 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 PAK1Q13153 545 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 BMS1Q14692 1282 aaKnown RBP15.29■□□□□ 0.04
PTPN1-202ENST00000541713 NPY5RQ15761 445 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 ANKRD13CQ8N6S4 541 aa15.29■□□□□ 0.04
PTPN1-202ENST00000541713 COL4A1P02462 1669 aa15.28■□□□□ 0.04
PTPN1-202ENST00000541713 B4DLN1 442 aa15.28■□□□□ 0.04
PTPN1-202ENST00000541713 CACNB1Q02641 598 aaPredicted RBP15.28■□□□□ 0.04
PTPN1-202ENST00000541713 LRRC41Q15345 812 aa15.28■□□□□ 0.04
PTPN1-202ENST00000541713 TRMT1LQ7Z2T5 733 aaKnown RBP15.28■□□□□ 0.04
PTPN1-202ENST00000541713 RABEP2Q9H5N1 569 aa15.28■□□□□ 0.04
PTPN1-202ENST00000541713 SLC39A2Q9NP94 309 aa15.28■□□□□ 0.04
PTPN1-202ENST00000541713 BAZ2AQ9UIF9 1905 aaKnown RBP15.28■□□□□ 0.04
PTPN1-202ENST00000541713 SPATA31A1Q5TZJ5 1347 aa15.28■□□□□ 0.04
PTPN1-202ENST00000541713 ADAMTS7Q9UKP4 1686 aa15.28■□□□□ 0.04
PTPN1-202ENST00000541713 DCCP43146 1447 aa15.28■□□□□ 0.04
PTPN1-202ENST00000541713 STX10O60499 249 aa15.28■□□□□ 0.04
PTPN1-202ENST00000541713 FCER1AP12319 257 aa15.28■□□□□ 0.04
PTPN1-202ENST00000541713 ARHGEF1Q92888 912 aaKnown RBP15.28■□□□□ 0.04
PTPN1-202ENST00000541713 KLRF2D3W0D1 207 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 TADA3O75528 432 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 SASH3O75995 380 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 TRIM34Q9BYJ4 488 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 L2HGDHQ9H9P8 463 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 ADGRG1Q9Y653 693 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 A0A0U1RQG5 324 aaPredicted RBP15.27■□□□□ 0.04
PTPN1-202ENST00000541713 CCP110O43303 1012 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 UFL1O94874 794 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 SLC16A2P36021 539 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 SCNN1DP51172 638 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 ST5P78524 1137 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 RCSD1Q6JBY9 416 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 RGS22Q8NE09 1264 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 ANKRD20A12PQ8NF67 263 aa15.27■□□□□ 0.04
PTPN1-202ENST00000541713 ADD3Q9UEY8 706 aaKnown RBP15.27■□□□□ 0.04
PTPN1-202ENST00000541713 RTCBQ9Y3I0 505 aaKnown RBP15.27■□□□□ 0.04
PTPN1-202ENST00000541713 TRIM21P19474 475 aaKnown RBP15.27■□□□□ 0.03
PTPN1-202ENST00000541713 COPB1P53618 953 aaKnown RBP15.27■□□□□ 0.03
PTPN1-202ENST00000541713 CCDC93Q567U6 631 aa15.27■□□□□ 0.03
PTPN1-202ENST00000541713 FHOD1Q9Y613 1164 aa15.27■□□□□ 0.03
PTPN1-202ENST00000541713 MORC2Q9Y6X9 1032 aaPredicted RBP15.27■□□□□ 0.03
PTPN1-202ENST00000541713 MTIF2P46199 727 aaKnown RBP15.26■□□□□ 0.03
PTPN1-202ENST00000541713 CACNB3P54284 484 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms