RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CCDC77Q9BR77 488 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 TSGA10Q9BZW7 698 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 MECOMQ03112 1051 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 RASGRF1Q13972 1273 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 GRIPAP1Q4V328 841 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 NELFBQ8WX92 580 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 IWS1Q96ST2 819 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 CYP19A1P11511 503 aaPredicted RBP15.7■□□□□ 0.1
USP3-204ENST00000540797 SNX16P57768 344 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 CCDC122Q5T0U0 273 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 SPOUT1Q5T280 376 aaKnown RBP15.7■□□□□ 0.1
USP3-204ENST00000540797 LIN9Q5TKA1 542 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 OSBPL3Q9H4L5 887 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 CPSF1Q10570 1443 aaKnown RBP15.7■□□□□ 0.1
USP3-204ENST00000540797 ERCC3P19447 782 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 ARHGEF6Q15052 776 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 UTP14CQ5TAP6 766 aaKnown RBP15.7■□□□□ 0.1
USP3-204ENST00000540797 KCTD1Q719H9 257 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 ABCA9Q8IUA7 1624 aa15.7■□□□□ 0.1
USP3-204ENST00000540797 POLR3GO15318 223 aaPredicted RBP15.69■□□□□ 0.1
USP3-204ENST00000540797 KCNQ2O43526 872 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 TXNRD1Q16881 649 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 TBC1D9BQ66K14 1250 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 ZBTB8OSQ8IWT0 167 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.69■□□□□ 0.1
USP3-204ENST00000540797 ZNF521Q96K83 1311 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 A0A1W2PRG0 241 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 ZNF589Q86UQ0 364 aaPredicted RBP15.69■□□□□ 0.1
USP3-204ENST00000540797 PPP1R9BQ96SB3 815 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 BTBD18B2RXH4 712 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 STAMBPO95630 424 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 PUS7LQ9H0K6 701 aaKnown RBP15.69■□□□□ 0.1
USP3-204ENST00000540797 MTUS1Q9ULD2 1270 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 PRPF6O94906 941 aaKnown RBP15.69■□□□□ 0.1
USP3-204ENST00000540797 MRPS9P82933 396 aaKnown RBP15.69■□□□□ 0.1
USP3-204ENST00000540797 FANCCQ00597 558 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 MIGA2Q7L4E1 593 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 PCDHB13Q9Y5F0 798 aa15.69■□□□□ 0.1
USP3-204ENST00000540797 SPOPO43791 374 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 USP17L8P0C7I0 530 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 TNNI1P19237 187 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 TERF1P54274 439 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 IQCGQ9H095 443 aaKnown RBP15.68■□□□□ 0.1
USP3-204ENST00000540797 NFE2L3Q9Y4A8 694 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 CYP21A2P08686 494 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 IREB2P48200 963 aaKnown RBP15.68■□□□□ 0.1
USP3-204ENST00000540797 SEL1L2Q5TEA6 688 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 NUP58Q9BVL2 599 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 TAB2Q9NYJ8 693 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 CARMIL3Q8ND23 1372 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 CD19P15391 556 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 SUGCTQ9HAC7 445 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 UNC13BO14795 1591 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 LPXNO60711 386 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 ADALQ6DHV7 355 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 RDH13Q8NBN7 331 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 PRIMPOLQ96LW4 560 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 PIH1D3Q9NQM4 214 aaKnown RBP15.68■□□□□ 0.1
USP3-204ENST00000540797 INCENPQ9NQS7 918 aa15.68■□□□□ 0.1
USP3-204ENST00000540797 BMP3P12645 472 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 RNF169Q8NCN4 708 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 OSBP2Q969R2 916 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 C1orf167Q5SNV9 1468 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 GADD45BO75293 160 aaPredicted RBP15.67■□□□□ 0.1
USP3-204ENST00000540797 SASH1O94885 1247 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 SREK1Q8WXA9 508 aaKnown RBP15.67■□□□□ 0.1
USP3-204ENST00000540797 NRBP2Q9NSY0 501 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 SPHKAPQ2M3C7 1700 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 AGTPBP1Q9UPW5 1226 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 ERICH4A6NGS2 130 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 EN1Q05925 392 aaPredicted RBP15.67■□□□□ 0.1
USP3-204ENST00000540797 SLC16A2P36021 539 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 PNOCQ13519 176 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 FAM160B1Q5W0V3 765 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 APOA5Q6Q788 366 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 DYNLL2Q96FJ2 89 aa15.67■□□□□ 0.1
USP3-204ENST00000540797 SRRTQ9BXP5 876 aaKnown RBP15.67■□□□□ 0.1
USP3-204ENST00000540797 BRD1O95696 1058 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 IGKV5-2P06315 115 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 PFKFB1P16118 471 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 PPP1R7Q15435 360 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 CCDC114Q96M63 670 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 USP28Q96RU2 1077 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 BCRP11274 1271 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 SCRN1Q12765 414 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 ADCK5Q3MIX3 580 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 HSPA1LP34931 641 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 LIG4P49917 911 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 CYP26C1Q6V0L0 522 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 PROCA1Q8NCQ7 364 aaPredicted RBP15.66■□□□□ 0.1
USP3-204ENST00000540797 ARL1P40616 181 aaPredicted RBP15.66■□□□□ 0.1
USP3-204ENST00000540797 FOXP4Q8IVH2 680 aaPredicted RBP15.66■□□□□ 0.1
USP3-204ENST00000540797 RASEFQ8IZ41 740 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 ABT1Q9ULW3 272 aaKnown RBP15.66■□□□□ 0.1
USP3-204ENST00000540797 MINPP1Q9UNW1 487 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 ZKSCAN5Q9Y2L8 839 aa15.66■□□□□ 0.1
USP3-204ENST00000540797 CYP2J2P51589 502 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 SLC9C1Q4G0N8 1177 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 MYOCDQ8IZQ8 938 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 NACA2Q9H009 215 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms