RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 RTN1Q16799 776 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 CEP55Q53EZ4 464 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 RILPL1Q5EBL4 403 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 THAP11Q96EK4 314 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 ZBTB40Q9NUA8 1239 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 GYG2O15488 501 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 NCAPH2Q6IBW4 605 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 PPP1R42Q7Z4L9 355 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 C2CD5Q86YS7 1000 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 CCDC125Q86Z20 511 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 ZNF710Q8N1W2 664 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 FANCLQ9NW38 375 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 MAPK8IP1Q9UQF2 711 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 BUB1O43683 1085 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 GOLGA8FQ08AF8 430 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 GOLGA8DPQ0D2H9 430 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 ZNF483Q8TF39 744 aaPredicted RBP9.6□□□□□ -0.87
YBX3-208ENST00000540447 NSMCE1Q8WV22 266 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 CARD9Q9H257 536 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 CADPSQ9ULU8 1353 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 KLHL30Q0D2K2 578 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 PNOCQ13519 176 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 SFMBT2Q5VUG0 894 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 MFN1Q8IWA4 741 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 GDAP1Q8TB36 358 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 RNF217Q8TC41 542 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 CUL5Q93034 780 aa9.6□□□□□ -0.87
YBX3-208ENST00000540447 AP2B1P63010 937 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 PLCB4Q15147 1175 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 KIF6Q6ZMV9 814 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 ANKRD35Q8N283 1001 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 CLMNQ96JQ2 1002 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 LLPHQ9BRT6 129 aaKnown RBP9.59□□□□□ -0.87
YBX3-208ENST00000540447 ATP8A1Q9Y2Q0 1164 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 KIAA1107Q9UPP5 1409 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 MYL6BP14649 208 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 PDE6CP51160 858 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 EIF3BP55884 814 aaKnown RBP9.59□□□□□ -0.87
YBX3-208ENST00000540447 Q4G0T1 1027 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 SNX29Q8TEQ0 813 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 TYW1Q9NV66 732 aaKnown RBP9.59□□□□□ -0.87
YBX3-208ENST00000540447 SNX14Q9Y5W7 946 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 E9PMD0 336 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 RBM6P78332 1123 aaKnown RBP9.59□□□□□ -0.87
YBX3-208ENST00000540447 GPIHBP1Q8IV16 184 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 MAIP1Q8WWC4 291 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 TRIM11Q96F44 468 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 TTC1Q99614 292 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 TRIM56Q9BRZ2 755 aaKnown RBP9.59□□□□□ -0.87
YBX3-208ENST00000540447 IL16Q14005 1332 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 CTIFO43310 598 aaKnown RBP9.59□□□□□ -0.87
YBX3-208ENST00000540447 ALDH1L1O75891 902 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 FAM200BP0CF97 657 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 NXNQ6DKJ4 435 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 RAPGEF4Q8WZA2 1011 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 PLAAQ9Y263 795 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 ANGPTL3Q9Y5C1 460 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 ZPR1O75312 459 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 RPS6KB1P23443 525 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 WTAPQ15007 396 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 MCMDC2Q4G0Z9 681 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 TMED8Q6PL24 325 aaPredicted RBP9.59□□□□□ -0.87
YBX3-208ENST00000540447 MFSD6Q6ZSS7 791 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 DHX32Q7L7V1 743 aaKnown RBP9.59□□□□□ -0.87
YBX3-208ENST00000540447 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.59□□□□□ -0.87
YBX3-208ENST00000540447 OMA1Q96E52 524 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 ETNK1Q9HBU6 452 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 NDE1Q9NXR1 346 aa9.59□□□□□ -0.87
YBX3-208ENST00000540447 SMARCA2P51531 1590 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 NSD3Q9BZ95 1437 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 EIF3HO15372 352 aaKnown RBP eCLIP9.58□□□□□ -0.88
YBX3-208ENST00000540447 ANO5Q75V66 913 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 RRAGAQ7L523 313 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 NELFBQ8WX92 580 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 MEIS3Q99687 375 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 HFM1A2PYH4 1435 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 PALM3A6NDB9 673 aaPredicted RBP9.58□□□□□ -0.88
YBX3-208ENST00000540447 TRAF5O00463 557 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 KRT3P12035 628 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 KRT2P35908 639 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 DHX9Q08211 1270 aaKnown RBP9.58□□□□□ -0.88
YBX3-208ENST00000540447 DCAF17Q5H9S7 520 aaPredicted RBP9.58□□□□□ -0.88
YBX3-208ENST00000540447 TLK2Q86UE8 772 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 KIRREL3Q8IZU9 778 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 ICA1LQ8NDH6 482 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 ZNF473Q8WTR7 871 aaKnown RBP9.58□□□□□ -0.88
YBX3-208ENST00000540447 ASCC2Q9H1I8 757 aaPredicted RBP9.58□□□□□ -0.88
YBX3-208ENST00000540447 EPN3Q9H201 632 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 EPC1Q9H2F5 836 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 ZMYM3Q14202 1370 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 APOA1P02647 267 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 SFSWAPQ12872 951 aaKnown RBP9.58□□□□□ -0.88
YBX3-208ENST00000540447 CFAP70Q5T0N1 1121 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 TMEM60Q9H2L4 133 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 EHD2Q9NZN4 543 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 WARS2Q9UGM6 360 aaKnown RBP9.58□□□□□ -0.88
YBX3-208ENST00000540447 AGTPBP1Q9UPW5 1226 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 GJA8P48165 433 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 SNX16P57768 344 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 SLC7A5Q01650 507 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms