RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TMEM47Q9BQJ4 181 aa12.16□□□□□ -0.46
CLIP1-213ENST00000540338 MAPK8IP1Q9UQF2 711 aa12.16□□□□□ -0.46
CLIP1-213ENST00000540338 TCHHQ07283 1943 aa12.16□□□□□ -0.46
CLIP1-213ENST00000540338 PTF1AQ7RTS3 328 aa12.16□□□□□ -0.46
CLIP1-213ENST00000540338 ZNF397Q8NF99 534 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-213ENST00000540338 TSG101Q99816 390 aa12.16□□□□□ -0.46
CLIP1-213ENST00000540338 COA1Q9GZY4 146 aa12.16□□□□□ -0.46
CLIP1-213ENST00000540338 H0YIN7 160 aa12.16□□□□□ -0.46
CLIP1-213ENST00000540338 SCNN1DP51172 638 aa12.16□□□□□ -0.46
CLIP1-213ENST00000540338 ADCY7P51828 1080 aa12.16□□□□□ -0.46
CLIP1-213ENST00000540338 SF3B2Q13435 895 aaKnown RBP12.16□□□□□ -0.46
CLIP1-213ENST00000540338 UBA5Q9GZZ9 404 aa12.16□□□□□ -0.46
CLIP1-213ENST00000540338 CCDC175P0C221 793 aa12.15□□□□□ -0.46
CLIP1-213ENST00000540338 CT47A1Q5JQC4 288 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-213ENST00000540338 PAGE5Q96GU1 130 aa12.15□□□□□ -0.46
CLIP1-213ENST00000540338 HPSEQ9Y251 543 aa12.15□□□□□ -0.46
CLIP1-213ENST00000540338 CCT6AP40227 531 aaKnown RBP12.15□□□□□ -0.46
CLIP1-213ENST00000540338 TXKP42681 527 aa12.15□□□□□ -0.46
CLIP1-213ENST00000540338 GRM4Q14833 912 aa12.15□□□□□ -0.46
CLIP1-213ENST00000540338 ARL6IP4Q66PJ3 421 aaKnown RBP12.15□□□□□ -0.46
CLIP1-213ENST00000540338 CNGA4Q8IV77 575 aa12.15□□□□□ -0.46
CLIP1-213ENST00000540338 FAM205CA6NFA0 338 aa12.15□□□□□ -0.46
CLIP1-213ENST00000540338 CABP7Q86V35 215 aa12.15□□□□□ -0.46
CLIP1-213ENST00000540338 CUL5Q93034 780 aa12.15□□□□□ -0.46
CLIP1-213ENST00000540338 OSBPL5Q9H0X9 879 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-213ENST00000540338 BICDL2A1A5D9 508 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 FOXN1O15353 648 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 USP17L2Q6R6M4 530 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 NEK8Q86SG6 692 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 VPS16Q9H269 839 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 BIN2Q9UBW5 565 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-213ENST00000540338 LAD1O00515 517 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 UBXN1Q04323 297 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 LRRC47Q8N1G4 583 aaKnown RBP12.14□□□□□ -0.47
CLIP1-213ENST00000540338 NELFBQ8WX92 580 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 TMX1Q9H3N1 280 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 FRMPD2Q68DX3 1309 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-213ENST00000540338 PSDA5PKW4 1024 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-213ENST00000540338 OR52Z1P0C646 297 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 NPR1P16066 1061 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 TOB1P50616 345 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-213ENST00000540338 PPP4CP60510 307 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 KARSQ15046 597 aaKnown RBP12.14□□□□□ -0.47
CLIP1-213ENST00000540338 SV2BQ7L1I2 683 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 DEF6Q9H4E7 631 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 ROBO1Q9Y6N7 1651 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 PPP1R2P41236 205 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 PDE4DQ08499 809 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 KIF4BQ2VIQ3 1234 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 CCDC70Q6NSX1 233 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 NBPF11Q86T75 865 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 TBC1D16Q8TBP0 767 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 TSC1Q92574 1164 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 CRAMP1Q96RY5 1269 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 LRWD1Q9UFC0 647 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 SERPINB13Q9UIV8 391 aa12.14□□□□□ -0.47
CLIP1-213ENST00000540338 KIF20AO95235 890 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 TCP10Q12799 353 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 KIAA1328Q86T90 577 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 VSTM4Q8IW00 320 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 TCEAL9Q9UHQ7 104 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.13□□□□□ -0.47
CLIP1-213ENST00000540338 RPN1P04843 607 aaKnown RBP12.13□□□□□ -0.47
CLIP1-213ENST00000540338 PRR29P0C7W0 189 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 ATP2C1P98194 919 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-213ENST00000540338 TXNRD1Q16881 649 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 ASPRV1Q53RT3 343 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 STAG2Q8N3U4 1231 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 NEDD1Q8NHV4 660 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 SWAP70Q9UH65 585 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 CNTNAP5Q8WYK1 1306 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 ADKP55263 362 aaKnown RBP12.13□□□□□ -0.47
CLIP1-213ENST00000540338 CALCRLQ16602 461 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 SP8Q8IXZ3 490 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 ELOA2Q8IYF1 753 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-213ENST00000540338 SRRTQ9BXP5 876 aaKnown RBP12.13□□□□□ -0.47
CLIP1-213ENST00000540338 GLT8D2Q9H1C3 349 aa12.13□□□□□ -0.47
CLIP1-213ENST00000540338 TRIM21P19474 475 aaKnown RBP12.12□□□□□ -0.47
CLIP1-213ENST00000540338 CDC25AP30304 524 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 SLC1A4P43007 532 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 NAP1L1P55209 391 aaKnown RBP12.12□□□□□ -0.47
CLIP1-213ENST00000540338 MSL1Q68DK7 614 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 NAP1L4Q99733 375 aaKnown RBP12.12□□□□□ -0.47
CLIP1-213ENST00000540338 SAMSN1Q9NSI8 373 aaKnown RBP12.12□□□□□ -0.47
CLIP1-213ENST00000540338 LRP6O75581 1613 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 GRIN1Q05586 938 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 USP49Q70CQ1 688 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 C2CD5Q86YS7 1000 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 KIAA0825Q8IV33 1275 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 CCDC43Q96MW1 224 aaKnown RBP12.12□□□□□ -0.47
CLIP1-213ENST00000540338 PIGSQ96S52 555 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 GYS1P13807 737 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 GPS2Q13227 327 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 SMYD4Q8IYR2 804 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-213ENST00000540338 OGFOD1Q8N543 542 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 ERO1AQ96HE7 468 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.12□□□□□ -0.47
CLIP1-213ENST00000540338 V9GYY5 206 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-213ENST00000540338 TTLL1O95922 423 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 TECP42680 631 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms