RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 FAM83BQ5T0W9 1011 aa17.6■□□□□ 0.41
VPS28-215ENST00000531924 MMP19Q99542 508 aa17.6■□□□□ 0.41
VPS28-215ENST00000531924 GDF15Q99988 308 aa17.6■□□□□ 0.41
VPS28-215ENST00000531924 FBXO28Q9NVF7 368 aa17.6■□□□□ 0.41
VPS28-215ENST00000531924 TTC41PQ6P2S7 1318 aa17.6■□□□□ 0.41
VPS28-215ENST00000531924 RANBP2P49792 3224 aaKnown RBP17.59■□□□□ 0.41
VPS28-215ENST00000531924 DNM1LO00429 736 aa17.59■□□□□ 0.41
VPS28-215ENST00000531924 COBLO75128 1261 aa17.59■□□□□ 0.41
VPS28-215ENST00000531924 SLC3A2P08195 630 aaKnown RBP17.59■□□□□ 0.41
VPS28-215ENST00000531924 CYBAP13498 195 aa17.59■□□□□ 0.41
VPS28-215ENST00000531924 COPB2P35606 906 aa17.59■□□□□ 0.41
VPS28-215ENST00000531924 STAT3P40763 770 aa17.59■□□□□ 0.41
VPS28-215ENST00000531924 MAGEA10P43363 369 aaPredicted RBP17.59■□□□□ 0.41
VPS28-215ENST00000531924 LRRC26Q2I0M4 334 aa17.59■□□□□ 0.41
VPS28-215ENST00000531924 FSD1Q9BTV5 496 aa17.59■□□□□ 0.41
VPS28-215ENST00000531924 UBE2OQ9C0C9 1292 aaKnown RBP17.59■□□□□ 0.41
VPS28-215ENST00000531924 PPP1R9AQ9ULJ8 1098 aa17.59■□□□□ 0.41
VPS28-215ENST00000531924 BAZ2AQ9UIF9 1905 aaKnown RBP17.59■□□□□ 0.41
VPS28-215ENST00000531924 PATL2C9JE40 543 aaKnown RBP17.58■□□□□ 0.4
VPS28-215ENST00000531924 KBTBD13C9JR72 458 aa17.58■□□□□ 0.4
VPS28-215ENST00000531924 VWA5AO00534 786 aa17.58■□□□□ 0.4
VPS28-215ENST00000531924 SEPT4O43236 478 aa17.58■□□□□ 0.4
VPS28-215ENST00000531924 RASA1P20936 1047 aa17.58■□□□□ 0.4
VPS28-215ENST00000531924 ATN1P54259 1190 aaPredicted RBP17.58■□□□□ 0.4
VPS28-215ENST00000531924 RIOX2Q8IUF8 465 aa17.58■□□□□ 0.4
VPS28-215ENST00000531924 TRPV1Q8NER1 839 aa17.58■□□□□ 0.4
VPS28-215ENST00000531924 LBHD1Q9BQE6 289 aaPredicted RBP17.58■□□□□ 0.4
VPS28-215ENST00000531924 SLF1Q9BQI6 1058 aa17.58■□□□□ 0.4
VPS28-215ENST00000531924 NYAP2Q9P242 653 aa17.58■□□□□ 0.4
VPS28-215ENST00000531924 CLIP2Q9UDT6 1046 aa17.58■□□□□ 0.4
VPS28-215ENST00000531924 PRKAG2Q9UGJ0 569 aa17.58■□□□□ 0.4
VPS28-215ENST00000531924 PCDHB15Q9Y5E8 787 aa17.58■□□□□ 0.4
VPS28-215ENST00000531924 F5H6K3 240 aa17.57■□□□□ 0.4
VPS28-215ENST00000531924 M0R2C6 588 aa17.57■□□□□ 0.4
VPS28-215ENST00000531924 SLC4A3P48751 1232 aa17.57■□□□□ 0.4
VPS28-215ENST00000531924 PDE4BQ07343 736 aa17.57■□□□□ 0.4
VPS28-215ENST00000531924 KLRC3Q07444 240 aa17.57■□□□□ 0.4
VPS28-215ENST00000531924 GJC2Q5T442 439 aaPredicted RBP17.57■□□□□ 0.4
VPS28-215ENST00000531924 ANO1Q5XXA6 986 aa17.57■□□□□ 0.4
VPS28-215ENST00000531924 MAML3Q96JK9 1138 aa17.57■□□□□ 0.4
VPS28-215ENST00000531924 NUP88Q99567 741 aaPredicted RBP17.57■□□□□ 0.4
VPS28-215ENST00000531924 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.57■□□□□ 0.4
VPS28-215ENST00000531924 ISY1Q9ULR0 285 aaKnown RBP17.57■□□□□ 0.4
VPS28-215ENST00000531924 ADAMTS5Q9UNA0 930 aa17.57■□□□□ 0.4
VPS28-215ENST00000531924 MYH8P13535 1937 aa17.57■□□□□ 0.4
VPS28-215ENST00000531924 PRDM1O75626 825 aa17.56■□□□□ 0.4
VPS28-215ENST00000531924 PRAMEF19Q5SWL8 479 aa17.56■□□□□ 0.4
VPS28-215ENST00000531924 IFNL3Q8IZI9 196 aa17.56■□□□□ 0.4
VPS28-215ENST00000531924 NAPBQ9H115 298 aa17.56■□□□□ 0.4
VPS28-215ENST00000531924 MYH7P12883 1935 aa17.55■□□□□ 0.4
VPS28-215ENST00000531924 ZBED4O75132 1171 aa17.55■□□□□ 0.4
VPS28-215ENST00000531924 NDUFB10O96000 172 aa17.55■□□□□ 0.4
VPS28-215ENST00000531924 PGK2P07205 417 aa17.55■□□□□ 0.4
VPS28-215ENST00000531924 TSPY3P0CV98 308 aa17.55■□□□□ 0.4
VPS28-215ENST00000531924 TSPY8P0CW00 308 aa17.55■□□□□ 0.4
VPS28-215ENST00000531924 MX1P20591 662 aa17.55■□□□□ 0.4
VPS28-215ENST00000531924 MDM2Q00987 491 aaPredicted RBP17.55■□□□□ 0.4
VPS28-215ENST00000531924 TDHQ8IZJ6 230 aa17.55■□□□□ 0.4
VPS28-215ENST00000531924 PRPF38AQ8NAV1 312 aaKnown RBP17.55■□□□□ 0.4
VPS28-215ENST00000531924 DDX11Q96FC9 970 aa17.55■□□□□ 0.4
VPS28-215ENST00000531924 TEX13BQ9BXU2 312 aa17.55■□□□□ 0.4
VPS28-215ENST00000531924 EPB41L4AQ9HCS5 686 aaPredicted RBP17.55■□□□□ 0.4
VPS28-215ENST00000531924 ROBO3Q96MS0 1386 aa17.54■□□□□ 0.4
VPS28-215ENST00000531924 TTLL1O95922 423 aa17.54■□□□□ 0.4
VPS28-215ENST00000531924 RRP1P56182 461 aaKnown RBP17.54■□□□□ 0.4
VPS28-215ENST00000531924 ANKRD45Q5TZF3 282 aa17.54■□□□□ 0.4
VPS28-215ENST00000531924 SNRNP48Q6IEG0 339 aaKnown RBP17.54■□□□□ 0.4
VPS28-215ENST00000531924 OTUD7AQ8TE49 926 aaPredicted RBP17.54■□□□□ 0.4
VPS28-215ENST00000531924 KIFC2Q96AC6 838 aa17.54■□□□□ 0.4
VPS28-215ENST00000531924 LRCH3Q96II8 777 aa17.54■□□□□ 0.4
VPS28-215ENST00000531924 TINF2Q9BSI4 451 aa17.54■□□□□ 0.4
VPS28-215ENST00000531924 NRBP1Q9UHY1 535 aa17.54■□□□□ 0.4
VPS28-215ENST00000531924 ZNF214Q9UL59 606 aaPredicted RBP17.54■□□□□ 0.4
VPS28-215ENST00000531924 CNPY2Q9Y2B0 182 aa17.54■□□□□ 0.4
VPS28-215ENST00000531924 ATP11BQ9Y2G3 1177 aa17.54■□□□□ 0.4
VPS28-215ENST00000531924 DIS3Q9Y2L1 958 aaKnown RBP17.54■□□□□ 0.4
VPS28-215ENST00000531924 SOX1O00570 391 aaPredicted RBP17.53■□□□□ 0.4
VPS28-215ENST00000531924 IGHA2P01877 340 aa17.53■□□□□ 0.4
VPS28-215ENST00000531924 RARBP10826 455 aa17.53■□□□□ 0.4
VPS28-215ENST00000531924 RTP1P59025 263 aa17.53■□□□□ 0.4
VPS28-215ENST00000531924 CPXCR1Q8N123 301 aa17.53■□□□□ 0.4
VPS28-215ENST00000531924 PI4K2BQ8TCG2 481 aa17.53■□□□□ 0.4
VPS28-215ENST00000531924 CEP95Q96GE4 821 aa17.53■□□□□ 0.4
VPS28-215ENST00000531924 SEC62Q99442 399 aaKnown RBP17.53■□□□□ 0.4
VPS28-215ENST00000531924 MTMR4Q9NYA4 1195 aa17.53■□□□□ 0.4
VPS28-215ENST00000531924 A0A0G2JMZ2 1700 aa17.52■□□□□ 0.4
VPS28-215ENST00000531924 ZNF236Q9UL36 1845 aa17.52■□□□□ 0.4
VPS28-215ENST00000531924 PPP4R3BQ5MIZ7 849 aa17.52■□□□□ 0.4
VPS28-215ENST00000531924 ZMYM1Q5SVZ6 1142 aa17.52■□□□□ 0.4
VPS28-215ENST00000531924 LRRC47Q8N1G4 583 aaKnown RBP17.52■□□□□ 0.4
VPS28-215ENST00000531924 XPNPEP3Q9NQH7 507 aa17.52■□□□□ 0.4
VPS28-215ENST00000531924 FEM1BQ9UK73 627 aa17.52■□□□□ 0.4
VPS28-215ENST00000531924 ALPK3Q96L96 1907 aa17.52■□□□□ 0.4
VPS28-215ENST00000531924 IGKV6D-41A0A0C4DH26 115 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 ADCYAP1R1P41586 468 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 TFAP4Q01664 338 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 PPARAQ07869 468 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 IKQ13123 557 aaPredicted RBP17.51■□□□□ 0.39
VPS28-215ENST00000531924 ZNF792Q3KQV3 632 aa17.51■□□□□ 0.39
VPS28-215ENST00000531924 LRIT3Q3SXY7 679 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms