RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SLC39A5Q6ZMH5 540 aa28.4■■■□□ 2.14
CPSF1-202ENST00000527827 DDX24Q9GZR7 859 aaKnown RBP eCLIP28.4■■■□□ 2.143e-21■■■■■ 61.8
CPSF1-202ENST00000527827 ADAMTS5Q9UNA0 930 aa28.4■■■□□ 2.14
CPSF1-202ENST00000527827 LAMA2P24043 3122 aaKnown RBP28.4■■■□□ 2.14
CPSF1-202ENST00000527827 KBTBD13C9JR72 458 aa28.39■■■□□ 2.14
CPSF1-202ENST00000527827 UBE3CQ15386 1083 aa28.39■■■□□ 2.14
CPSF1-202ENST00000527827 PRKAG2Q9UGJ0 569 aa28.39■■■□□ 2.14
CPSF1-202ENST00000527827 CUL9Q8IWT3 2517 aa28.39■■■□□ 2.14
CPSF1-202ENST00000527827 FCER1AP12319 257 aa28.38■■■□□ 2.13
CPSF1-202ENST00000527827 EEF2P13639 858 aaKnown RBP28.38■■■□□ 2.13
CPSF1-202ENST00000527827 SNX17Q15036 470 aa28.38■■■□□ 2.13
CPSF1-202ENST00000527827 FAM109BQ6ICB4 259 aaPredicted RBP28.38■■■□□ 2.13
CPSF1-202ENST00000527827 PLXNA1Q9UIW2 1896 aa28.38■■■□□ 2.13
CPSF1-202ENST00000527827 SLC25A27O95847 323 aa28.37■■■□□ 2.13
CPSF1-202ENST00000527827 LRRC41Q15345 812 aa28.37■■■□□ 2.13
CPSF1-202ENST00000527827 FBXO28Q9NVF7 368 aa28.37■■■□□ 2.13
CPSF1-202ENST00000527827 GREB1LQ9C091 1923 aaPredicted RBP28.36■■■□□ 2.13
CPSF1-202ENST00000527827 MYCNP04198 464 aaPredicted RBP28.36■■■□□ 2.13
CPSF1-202ENST00000527827 TRIM60Q495X7 471 aa28.36■■■□□ 2.13
CPSF1-202ENST00000527827 FAM47AQ5JRC9 791 aa28.36■■■□□ 2.13
CPSF1-202ENST00000527827 CTR9Q6PD62 1173 aa28.36■■■□□ 2.13
CPSF1-202ENST00000527827 AMOTL1Q8IY63 956 aa28.36■■■□□ 2.13
CPSF1-202ENST00000527827 KANSL2Q9H9L4 492 aa28.36■■■□□ 2.13
CPSF1-202ENST00000527827 SLC4A4Q9Y6R1 1079 aa28.36■■■□□ 2.13
CPSF1-202ENST00000527827 ADCYAP1R1P41586 468 aa28.35■■■□□ 2.13
CPSF1-202ENST00000527827 RIOX2Q8IUF8 465 aa28.35■■■□□ 2.13
CPSF1-202ENST00000527827 GUCD1Q96NT3 240 aa28.35■■■□□ 2.13
CPSF1-202ENST00000527827 PUS7LQ9H0K6 701 aaKnown RBP28.35■■■□□ 2.13
CPSF1-202ENST00000527827 FERMT2Q96AC1 680 aa28.34■■■□□ 2.13
CPSF1-202ENST00000527827 DDRGK1Q96HY6 314 aa28.34■■■□□ 2.13
CPSF1-202ENST00000527827 MMP19Q99542 508 aa28.34■■■□□ 2.13
CPSF1-202ENST00000527827 GNL3Q9BVP2 549 aaKnown RBP eCLIP28.34■■■□□ 2.13
CPSF1-202ENST00000527827 PPP1R9AQ9ULJ8 1098 aa28.34■■■□□ 2.13
CPSF1-202ENST00000527827 VWA5AO00534 786 aa28.33■■■□□ 2.13
CPSF1-202ENST00000527827 PGK2P07205 417 aa28.33■■■□□ 2.13
CPSF1-202ENST00000527827 SHHQ15465 462 aa28.33■■■□□ 2.13
CPSF1-202ENST00000527827 REPS2Q8NFH8 660 aa28.33■■■□□ 2.13
CPSF1-202ENST00000527827 PRDM5Q9NQX1 630 aaPredicted RBP28.33■■■□□ 2.13
CPSF1-202ENST00000527827 NRBP1Q9UHY1 535 aa28.33■■■□□ 2.13
CPSF1-202ENST00000527827 STAT3P40763 770 aa28.32■■■□□ 2.12
CPSF1-202ENST00000527827 ZNF792Q3KQV3 632 aa28.32■■■□□ 2.12
CPSF1-202ENST00000527827 FAM83BQ5T0W9 1011 aa28.32■■■□□ 2.12
CPSF1-202ENST00000527827 C1orf53Q5VUE5 145 aa28.32■■■□□ 2.12
CPSF1-202ENST00000527827 GOPCQ9HD26 462 aa28.32■■■□□ 2.12
CPSF1-202ENST00000527827 PDLIM7Q9NR12 457 aa28.32■■■□□ 2.12
CPSF1-202ENST00000527827 ZNF214Q9UL59 606 aaPredicted RBP28.32■■■□□ 2.12
CPSF1-202ENST00000527827 C9orf50Q5SZB4 431 aa28.31■■■□□ 2.12
CPSF1-202ENST00000527827 ZSCAN25Q6NSZ9 544 aa28.31■■■□□ 2.12
CPSF1-202ENST00000527827 SH3RF1Q7Z6J0 888 aa28.31■■■□□ 2.12
CPSF1-202ENST00000527827 BADQ92934 168 aa28.31■■■□□ 2.12
CPSF1-202ENST00000527827 TINF2Q9BSI4 451 aa28.31■■■□□ 2.12
CPSF1-202ENST00000527827 PHF24Q9UPV7 400 aa28.31■■■□□ 2.12
CPSF1-202ENST00000527827 DIS3Q9Y2L1 958 aaKnown RBP28.31■■■□□ 2.12
CPSF1-202ENST00000527827 TRIM43BA6NCK2 446 aa28.3■■■□□ 2.12
CPSF1-202ENST00000527827 TAL1P17542 331 aaPredicted RBP28.3■■■□□ 2.12
CPSF1-202ENST00000527827 KCTD2Q14681 263 aa28.3■■■□□ 2.12
CPSF1-202ENST00000527827 DIEXFQ68CQ4 756 aaKnown RBP28.3■■■□□ 2.12
CPSF1-202ENST00000527827 TRIM43Q96BQ3 446 aaPredicted RBP28.3■■■□□ 2.12
CPSF1-202ENST00000527827 FAM161BQ96MY7 647 aa28.3■■■□□ 2.12
CPSF1-202ENST00000527827 LRRCC1Q9C099 1032 aa28.3■■■□□ 2.12
CPSF1-202ENST00000527827 CHMP4BQ9H444 224 aaKnown RBP28.3■■■□□ 2.12
CPSF1-202ENST00000527827 XPNPEP3Q9NQH7 507 aa28.3■■■□□ 2.12
CPSF1-202ENST00000527827 SMARCA5O60264 1052 aaPredicted RBP28.29■■■□□ 2.12
CPSF1-202ENST00000527827 STRBPQ96SI9 672 aaKnown RBP28.29■■■□□ 2.12
CPSF1-202ENST00000527827 ARPP21Q9UBL0 812 aaPredicted RBP28.29■■■□□ 2.12
CPSF1-202ENST00000527827 UNC80Q8N2C7 3258 aa28.29■■■□□ 2.12
CPSF1-202ENST00000527827 RAD21O60216 631 aa28.28■■■□□ 2.12
CPSF1-202ENST00000527827 RARBP10826 455 aa28.28■■■□□ 2.12
CPSF1-202ENST00000527827 ROBO3Q96MS0 1386 aa28.27■■■□□ 2.12
CPSF1-202ENST00000527827 PGK1P00558 417 aa28.27■■■□□ 2.12
CPSF1-202ENST00000527827 ZNF865P0CJ78 1059 aaPredicted RBP28.27■■■□□ 2.12
CPSF1-202ENST00000527827 RASA1P20936 1047 aa28.27■■■□□ 2.12
CPSF1-202ENST00000527827 COPB2P35606 906 aa28.27■■■□□ 2.12
CPSF1-202ENST00000527827 TLE2Q04725 743 aa28.27■■■□□ 2.12
CPSF1-202ENST00000527827 SBK1Q52WX2 424 aa28.27■■■□□ 2.12
CPSF1-202ENST00000527827 ZNF697Q5TEC3 545 aa28.27■■■□□ 2.12
CPSF1-202ENST00000527827 NUP88Q99567 741 aaPredicted RBP28.27■■■□□ 2.12
CPSF1-202ENST00000527827 GSG1L2A8MUP6 293 aa28.26■■■□□ 2.11
CPSF1-202ENST00000527827 ITGB8P26012 769 aa28.25■■■□□ 2.11
CPSF1-202ENST00000527827 RNF180Q86T96 592 aa28.25■■■□□ 2.11
CPSF1-202ENST00000527827 LENG1Q96BZ8 264 aaPredicted RBP28.25■■■□□ 2.11
CPSF1-202ENST00000527827 SLF1Q9BQI6 1058 aa28.25■■■□□ 2.11
CPSF1-202ENST00000527827 NYAP2Q9P242 653 aa28.25■■■□□ 2.11
CPSF1-202ENST00000527827 MYH4Q9Y623 1939 aa28.24■■■□□ 2.11
CPSF1-202ENST00000527827 AKR1A1P14550 325 aa28.24■■■□□ 2.11
CPSF1-202ENST00000527827 C20orf194Q5TEA3 1177 aa28.24■■■□□ 2.11
CPSF1-202ENST00000527827 STK11IPQ8N1F8 1099 aa28.24■■■□□ 2.11
CPSF1-202ENST00000527827 ECHDC1Q9NTX5 307 aa28.24■■■□□ 2.11
CPSF1-202ENST00000527827 RCAN3Q9UKA8 241 aa28.24■■■□□ 2.11
CPSF1-202ENST00000527827 GIMAP6Q6P9H5 292 aa28.23■■■□□ 2.11
CPSF1-202ENST00000527827 OSBP2Q969R2 916 aa28.23■■■□□ 2.11
CPSF1-202ENST00000527827 TEX13BQ9BXU2 312 aa28.23■■■□□ 2.11
CPSF1-202ENST00000527827 RIPK3Q9Y572 518 aa28.23■■■□□ 2.11
CPSF1-202ENST00000527827 TACC3Q9Y6A5 838 aa28.23■■■□□ 2.11
CPSF1-202ENST00000527827 A0A1W2PQ45 241 aaPredicted RBP28.22■■■□□ 2.11
CPSF1-202ENST00000527827 A0A1W2PQY0 241 aa28.22■■■□□ 2.11
CPSF1-202ENST00000527827 F5H6K3 240 aa28.22■■■□□ 2.11
CPSF1-202ENST00000527827 ADAMTS4O75173 837 aa28.22■■■□□ 2.11
CPSF1-202ENST00000527827 NDUFB10O96000 172 aa28.22■■■□□ 2.11
CPSF1-202ENST00000527827 KLRC3Q07444 240 aa28.22■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms