RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 SLC27A2O14975 620 aa23.74■■□□□ 1.39
USP53-208ENST00000514305 FARP2O94887 1054 aaPredicted RBP23.74■■□□□ 1.39
USP53-208ENST00000514305 TSPY3P0CV98 308 aa23.74■■□□□ 1.39
USP53-208ENST00000514305 TSPY8P0CW00 308 aa23.74■■□□□ 1.39
USP53-208ENST00000514305 RAB3GAP1Q15042 981 aa23.74■■□□□ 1.39
USP53-208ENST00000514305 RRP12Q5JTH9 1297 aaKnown RBP23.74■■□□□ 1.39
USP53-208ENST00000514305 GPRC5AQ8NFJ5 357 aa23.74■■□□□ 1.39
USP53-208ENST00000514305 PCDH10Q9P2E7 1040 aa23.74■■□□□ 1.39
USP53-208ENST00000514305 PLXNB2O15031 1838 aa23.73■■□□□ 1.39
USP53-208ENST00000514305 MYH8P13535 1937 aa23.73■■□□□ 1.39
USP53-208ENST00000514305 RANBP6O60518 1105 aaKnown RBP23.73■■□□□ 1.39
USP53-208ENST00000514305 TFRCP02786 760 aaKnown RBP23.73■■□□□ 1.39
USP53-208ENST00000514305 HMGCRP04035 888 aa23.73■■□□□ 1.39
USP53-208ENST00000514305 HSPA4P34932 840 aa23.73■■□□□ 1.39
USP53-208ENST00000514305 CCAR1Q8IX12 1150 aaKnown RBP23.73■■□□□ 1.39
USP53-208ENST00000514305 SLC44A5Q8NCS7 719 aa23.73■■□□□ 1.39
USP53-208ENST00000514305 NCOA7Q8NI08 942 aa23.73■■□□□ 1.39
USP53-208ENST00000514305 DEFB118Q96PH6 123 aa23.73■■□□□ 1.39
USP53-208ENST00000514305 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.73■■□□□ 1.39
USP53-208ENST00000514305 H0YGN5 161 aa23.72■■□□□ 1.39
USP53-208ENST00000514305 RASA1P20936 1047 aa23.72■■□□□ 1.39
USP53-208ENST00000514305 CLCN6P51797 869 aa23.72■■□□□ 1.39
USP53-208ENST00000514305 USP14P54578 494 aa23.72■■□□□ 1.39
USP53-208ENST00000514305 ZYXQ15942 572 aaKnown RBP23.72■■□□□ 1.39
USP53-208ENST00000514305 TSGA10IPQ3SY00 556 aa23.72■■□□□ 1.39
USP53-208ENST00000514305 IQCA1Q86XH1 822 aa23.72■■□□□ 1.39
USP53-208ENST00000514305 PAK6Q9NQU5 681 aaPredicted RBP23.72■■□□□ 1.39
USP53-208ENST00000514305 EMILIN3Q9NT22 766 aa23.72■■□□□ 1.39
USP53-208ENST00000514305 PRDM1O75626 825 aa23.71■■□□□ 1.39
USP53-208ENST00000514305 HMGB1P09429 215 aaKnown RBP23.71■■□□□ 1.39
USP53-208ENST00000514305 PSMA5P28066 241 aa23.71■■□□□ 1.39
USP53-208ENST00000514305 TFAP4Q01664 338 aa23.71■■□□□ 1.39
USP53-208ENST00000514305 UBE2Q1Q7Z7E8 422 aa23.71■■□□□ 1.39
USP53-208ENST00000514305 SOCS4Q8WXH5 440 aa23.71■■□□□ 1.39
USP53-208ENST00000514305 C12orf42Q96LP6 360 aa23.71■■□□□ 1.39
USP53-208ENST00000514305 PAGR1Q9BTK6 254 aa23.71■■□□□ 1.39
USP53-208ENST00000514305 KANSL2Q9H9L4 492 aa23.71■■□□□ 1.39
USP53-208ENST00000514305 GJD2Q9UKL4 321 aa23.71■■□□□ 1.39
USP53-208ENST00000514305 E7EWF7 191 aa23.7■■□□□ 1.38
USP53-208ENST00000514305 MAPK4P31152 587 aa23.7■■□□□ 1.38
USP53-208ENST00000514305 TBC1D10CQ8IV04 446 aa23.7■■□□□ 1.38
USP53-208ENST00000514305 NEDD1Q8NHV4 660 aa23.7■■□□□ 1.38
USP53-208ENST00000514305 PHF12Q96QT6 1004 aa23.7■■□□□ 1.38
USP53-208ENST00000514305 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.7■■□□□ 1.38
USP53-208ENST00000514305 SH2D4AQ9H788 454 aa23.7■■□□□ 1.38
USP53-208ENST00000514305 TXNRD2Q9NNW7 524 aa23.7■■□□□ 1.38
USP53-208ENST00000514305 CEP290O15078 2479 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 USP17L15C9J2P7 530 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 USP17L13C9JLJ4 530 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 USP17L11C9JVI0 530 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 USP17L18D6R9N7 530 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 USP17L22D6RA61 530 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 USP17L17D6RBQ6 530 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 USP17L19D6RCP7 530 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 USP17L20D6RJB6 530 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 ERVK-9P63128 1117 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 ERVK-24P63145 666 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 USP17L24Q0WX57 530 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 SART3Q15020 963 aaKnown RBP23.69■■□□□ 1.38
USP53-208ENST00000514305 NUDT12Q9BQG2 462 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 ARHGEF10LQ9HCE6 1279 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 CWC22Q9HCG8 908 aaKnown RBP23.69■■□□□ 1.38
USP53-208ENST00000514305 RBPJLQ9UBG7 517 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 COLQQ9Y215 455 aaPredicted RBP23.69■■□□□ 1.38
USP53-208ENST00000514305 NR2E3Q9Y5X4 410 aa23.69■■□□□ 1.38
USP53-208ENST00000514305 AKR1B1P15121 316 aa23.68■■□□□ 1.38
USP53-208ENST00000514305 ANAPC15P60006 121 aa23.68■■□□□ 1.38
USP53-208ENST00000514305 KCNB2Q92953 911 aa23.68■■□□□ 1.38
USP53-208ENST00000514305 KIAA1683Q9H0B3 1180 aa23.68■■□□□ 1.38
USP53-208ENST00000514305 HMX1Q9NP08 348 aaPredicted RBP23.68■■□□□ 1.38
USP53-208ENST00000514305 TCP11L1Q9NUJ3 509 aa23.68■■□□□ 1.38
USP53-208ENST00000514305 RPTORQ8N122 1335 aa23.67■■□□□ 1.38
USP53-208ENST00000514305 ERICH2A1L162 156 aa23.67■■□□□ 1.38
USP53-208ENST00000514305 PEX10O60683 326 aa23.67■■□□□ 1.38
USP53-208ENST00000514305 CYP2B6P20813 491 aa23.67■■□□□ 1.38
USP53-208ENST00000514305 NEK1Q96PY6 1258 aa23.67■■□□□ 1.38
USP53-208ENST00000514305 MTA3Q9BTC8 594 aa23.67■■□□□ 1.38
USP53-208ENST00000514305 BACH2Q9BYV9 841 aa23.67■■□□□ 1.38
USP53-208ENST00000514305 B4E1Z4 1266 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 SMIM22K7EJ46 135 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 KDM4AO75164 1064 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 VCAM1P19320 739 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 MCM5P33992 734 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 CCNA1P78396 465 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 ICA1Q05084 483 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 FAM47AQ5JRC9 791 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 TRMT44Q8IYL2 757 aaKnown RBP23.66■■□□□ 1.38
USP53-208ENST00000514305 TTC14Q96N46 770 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 UBAC1Q9BSL1 405 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 NBPF3Q9H094 633 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 CRISPLD2Q9H0B8 497 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 RABGAP1Q9Y3P9 1069 aa23.66■■□□□ 1.38
USP53-208ENST00000514305 XRCC5P13010 732 aaKnown RBP23.65■■□□□ 1.38
USP53-208ENST00000514305 SEPT2Q15019 361 aa23.65■■□□□ 1.38
USP53-208ENST00000514305 Q3C1V9 767 aa23.65■■□□□ 1.38
USP53-208ENST00000514305 GPR142Q7Z601 462 aa23.65■■□□□ 1.38
USP53-208ENST00000514305 ACER1Q8TDN7 264 aa23.65■■□□□ 1.38
USP53-208ENST00000514305 TRIB2Q92519 343 aa23.65■■□□□ 1.38
USP53-208ENST00000514305 SYNPO2Q9UMS6 1093 aa23.65■■□□□ 1.38
USP53-208ENST00000514305 LAMA4Q16363 1823 aa23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms