RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 RGPD8O14715 1765 aaPredicted RBP6.8□□□□□ -1.32
VPS41-214ENST00000490924 VPS37CA5D8V6 355 aaPredicted RBP6.8□□□□□ -1.32
VPS41-214ENST00000490924 CIAO1O76071 339 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 LARGE1O95461 756 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 IGKV5-2P06315 115 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 EIF2S2P20042 333 aaKnown RBP6.8□□□□□ -1.32
VPS41-214ENST00000490924 RFX5P48382 616 aaPredicted RBP6.8□□□□□ -1.32
VPS41-214ENST00000490924 ZNF75DP51815 510 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 STX1AQ16623 288 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 MCMDC2Q4G0Z9 681 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 TPRNQ4KMQ1 711 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 DNTTIP2Q5QJE6 756 aaKnown RBP6.8□□□□□ -1.32
VPS41-214ENST00000490924 GIMAP6Q6P9H5 292 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 ZNF790Q6PG37 636 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 ELMSAN1Q6PJG2 1045 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 LRP10Q7Z4F1 713 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 FAM35AQ86V20 835 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 ELOA2Q8IYF1 753 aaPredicted RBP6.8□□□□□ -1.32
VPS41-214ENST00000490924 KBTBD3Q8NAB2 608 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 VTI1AQ96AJ9 217 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 SUCLG2Q96I99 432 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 NEK1Q96PY6 1258 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 HINFPQ9BQA5 517 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 FSD1Q9BTV5 496 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 KCNF1Q9H3M0 494 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 BICC1Q9H694 974 aaKnown RBP6.8□□□□□ -1.32
VPS41-214ENST00000490924 SLC52A2Q9HAB3 445 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 TRPM3Q9HCF6 1732 aaPredicted RBP6.8□□□□□ -1.32
VPS41-214ENST00000490924 ANO10Q9NW15 660 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 DACT1Q9NYF0 836 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 MKRN1Q9UHC7 482 aaKnown RBP6.8□□□□□ -1.32
VPS41-214ENST00000490924 PXDNQ92626 1479 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 A0A0D9SFI3 127 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 CCP110O43303 1012 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 DHX16O60231 1041 aaKnown RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 ZFYP08048 801 aaPredicted RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 SNRPA1P09661 255 aaKnown RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 SELPP16109 830 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 ZNF165P49910 485 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 FAM160A1Q05DH4 1040 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 COL9A3Q14050 684 aaPredicted RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 TNNI3KQ59H18 835 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 SH3PXD2AQ5TCZ1 1133 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 TAF3Q5VWG9 929 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 CDC37L1Q7L3B6 337 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 DHX32Q7L7V1 743 aaKnown RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 BRAPQ7Z569 592 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 FMR1NBQ8N0W7 255 aaPredicted RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 SCG3Q8WXD2 468 aaKnown RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 FOXD4L4Q8WXT5 416 aaPredicted RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 ZNF594Q96JF6 807 aaPredicted RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 PKNOX2Q96KN3 472 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 OSBPL5Q9H0X9 879 aaPredicted RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 TTC12Q9H892 705 aaPredicted RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 CBX8Q9HC52 389 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.79□□□□□ -1.32
VPS41-214ENST00000490924 CGNQ9P2M7 1197 aaKnown RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 MORC2Q9Y6X9 1032 aaPredicted RBP6.79□□□□□ -1.32
VPS41-214ENST00000490924 FPGT-TNNI3KV9GXZ4 949 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 CPDO75976 1380 aa6.79□□□□□ -1.32
VPS41-214ENST00000490924 HYAL3O43820 417 aaPredicted RBP6.78□□□□□ -1.32
VPS41-214ENST00000490924 NRDCO43847 1150 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 ATP9BO43861 1147 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 TOM1O60784 492 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 PTCD1O75127 700 aaKnown RBP6.78□□□□□ -1.32
VPS41-214ENST00000490924 YEATS4O95619 227 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 NFKB1P19838 968 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 IL15P40933 162 aaPredicted RBP6.78□□□□□ -1.32
VPS41-214ENST00000490924 EXOSC10Q01780 885 aaKnown RBP6.78□□□□□ -1.32
VPS41-214ENST00000490924 PTPN12Q05209 780 aaKnown RBP6.78□□□□□ -1.32
VPS41-214ENST00000490924 GABPB1Q06547 395 aaPredicted RBP6.78□□□□□ -1.32
VPS41-214ENST00000490924 DMTNQ08495 405 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 IQCB1Q15051 598 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 ANO6Q4KMQ2 910 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 IER5Q5VY09 327 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 ZSCAN25Q6NSZ9 544 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 TMED8Q6PL24 325 aaPredicted RBP6.78□□□□□ -1.32
VPS41-214ENST00000490924 CCDC73Q6ZRK6 1079 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 NOL8Q76FK4 1167 aaKnown RBP6.78□□□□□ -1.32
VPS41-214ENST00000490924 CEP57L1Q8IYX8 460 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 STAG2Q8N3U4 1231 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 ZNF280CQ8ND82 737 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 ENGASEQ8NFI3 743 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 PLBD2Q8NHP8 589 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 KCNG4Q8TDN1 519 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 ANKRD24Q8TF21 1146 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 CHAMP1Q96JM3 812 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 FAM227BQ96M60 508 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 TIGD1Q96MW7 591 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 RTEL1Q9NZ71 1219 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 CTNNA3Q9UI47 895 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 CARMIL3Q8ND23 1372 aa6.78□□□□□ -1.32
VPS41-214ENST00000490924 SCN11AQ9UI33 1791 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 PKD1L3Q7Z443 1732 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 FAM237AA0A1B0GTK4 181 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 GOLGA6L19H0YKK7 550 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 H3BQV1 296 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 KINO60870 393 aaKnown RBP6.77□□□□□ -1.33
VPS41-214ENST00000490924 CPB1P15086 417 aa6.77□□□□□ -1.33
VPS41-214ENST00000490924 LIG1P18858 919 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms