RNA–Protein interactions for RNA: ENST00000488072.1

SHROOM1-205, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 423 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-205ENST00000488072 IFIT3O14879 490 aaKnown RBP20.17■□□□□ 0.82
SHROOM1-205ENST00000488072 WDR46O15213 610 aaKnown RBP20.17■□□□□ 0.82
SHROOM1-205ENST00000488072 PRC1O43663 620 aa20.17■□□□□ 0.82
SHROOM1-205ENST00000488072 FLOT1O75955 427 aa20.17■□□□□ 0.82
SHROOM1-205ENST00000488072 SP3Q02447 781 aa20.17■□□□□ 0.82
SHROOM1-205ENST00000488072 PABPC4Q13310 644 aaKnown RBP eCLIP20.17■□□□□ 0.82
SHROOM1-205ENST00000488072 RAB11FIP4Q86YS3 637 aa20.17■□□□□ 0.82
SHROOM1-205ENST00000488072 GMCL1P1Q8NEA9 526 aa20.17■□□□□ 0.82
SHROOM1-205ENST00000488072 LPAR1Q92633 364 aa20.17■□□□□ 0.82
SHROOM1-205ENST00000488072 GPCPD1Q9NPB8 672 aa20.17■□□□□ 0.82
SHROOM1-205ENST00000488072 GOLGA8HP0CJ92 632 aa20.16■□□□□ 0.82
SHROOM1-205ENST00000488072 DSG3P32926 999 aa20.16■□□□□ 0.82
SHROOM1-205ENST00000488072 IQCA1Q86XH1 822 aa20.16■□□□□ 0.82
SHROOM1-205ENST00000488072 IGDCC4Q8TDY8 1250 aa20.16■□□□□ 0.82
SHROOM1-205ENST00000488072 ANKS1AQ92625 1134 aa20.16■□□□□ 0.82
SHROOM1-205ENST00000488072 UBAC1Q9BSL1 405 aa20.16■□□□□ 0.82
SHROOM1-205ENST00000488072 PNMA3Q9UL41 463 aa20.16■□□□□ 0.82
SHROOM1-205ENST00000488072 MYH4Q9Y623 1939 aa20.15■□□□□ 0.82
SHROOM1-205ENST00000488072 TMEM232C9JQI7 657 aa20.15■□□□□ 0.82
SHROOM1-205ENST00000488072 BMP3P12645 472 aa20.15■□□□□ 0.82
SHROOM1-205ENST00000488072 SLC16A2P36021 539 aa20.15■□□□□ 0.82
SHROOM1-205ENST00000488072 COG2Q14746 738 aa20.15■□□□□ 0.82
SHROOM1-205ENST00000488072 CCDC96Q2M329 555 aa20.15■□□□□ 0.82
SHROOM1-205ENST00000488072 DGKHQ86XP1 1220 aa20.15■□□□□ 0.82
SHROOM1-205ENST00000488072 JAKMIP1Q96N16 626 aaKnown RBP20.15■□□□□ 0.82
SHROOM1-205ENST00000488072 NEK1Q96PY6 1258 aa20.15■□□□□ 0.82
SHROOM1-205ENST00000488072 MYL10Q9BUA6 226 aa20.15■□□□□ 0.82
SHROOM1-205ENST00000488072 PDHBP11177 359 aa20.14■□□□□ 0.81
SHROOM1-205ENST00000488072 SLC1A4P43007 532 aa20.14■□□□□ 0.81
SHROOM1-205ENST00000488072 TSGA10IPQ3SY00 556 aa20.14■□□□□ 0.81
SHROOM1-205ENST00000488072 TMEM67Q5HYA8 995 aa20.14■□□□□ 0.81
SHROOM1-205ENST00000488072 RNF20Q5VTR2 975 aa20.14■□□□□ 0.81
SHROOM1-205ENST00000488072 PNMA1Q8ND90 353 aa20.14■□□□□ 0.81
SHROOM1-205ENST00000488072 KIFC2Q96AC6 838 aa20.14■□□□□ 0.81
SHROOM1-205ENST00000488072 TTC14Q96N46 770 aa20.14■□□□□ 0.81
SHROOM1-205ENST00000488072 PORCNQ9H237 461 aa20.14■□□□□ 0.81
SHROOM1-205ENST00000488072 LY9Q9HBG7 655 aa20.14■□□□□ 0.81
SHROOM1-205ENST00000488072 SH2B2O14492 632 aaPredicted RBP20.13■□□□□ 0.81
SHROOM1-205ENST00000488072 LACTBP83111 547 aaPredicted RBP20.13■□□□□ 0.81
SHROOM1-205ENST00000488072 EXOSC10Q01780 885 aaKnown RBP20.13■□□□□ 0.81
SHROOM1-205ENST00000488072 IFIT1BQ5T764 474 aaKnown RBP20.13■□□□□ 0.81
SHROOM1-205ENST00000488072 GMCL1Q96IK5 515 aa20.13■□□□□ 0.81
SHROOM1-205ENST00000488072 TRIM47Q96LD4 638 aa20.13■□□□□ 0.81
SHROOM1-205ENST00000488072 KAT14Q9H8E8 782 aa20.13■□□□□ 0.81
SHROOM1-205ENST00000488072 PRDM10Q9NQV6 1147 aa20.13■□□□□ 0.81
SHROOM1-205ENST00000488072 PPP1R9AQ9ULJ8 1098 aa20.13■□□□□ 0.81
SHROOM1-205ENST00000488072 RLFQ13129 1914 aa20.13■□□□□ 0.81
SHROOM1-205ENST00000488072 RXRAP19793 462 aa20.12■□□□□ 0.81
SHROOM1-205ENST00000488072 MCM5P33992 734 aa20.12■□□□□ 0.81
SHROOM1-205ENST00000488072 TMEM132BQ14DG7 1078 aa20.12■□□□□ 0.81
SHROOM1-205ENST00000488072 WTAPQ15007 396 aa20.12■□□□□ 0.81
SHROOM1-205ENST00000488072 SLC35G1Q2M3R5 365 aa20.12■□□□□ 0.81
SHROOM1-205ENST00000488072 STAG2Q8N3U4 1231 aa20.12■□□□□ 0.81
SHROOM1-205ENST00000488072 REPS2Q8NFH8 660 aa20.12■□□□□ 0.81
SHROOM1-205ENST00000488072 SLF1Q9BQI6 1058 aa20.12■□□□□ 0.81
SHROOM1-205ENST00000488072 UBA5Q9GZZ9 404 aa20.12■□□□□ 0.81
SHROOM1-205ENST00000488072 EFCC1Q9HA90 598 aa20.12■□□□□ 0.81
SHROOM1-205ENST00000488072 SNHG28P0DPA3 235 aa20.11■□□□□ 0.81
SHROOM1-205ENST00000488072 ZKSCAN1P17029 563 aaPredicted RBP20.11■□□□□ 0.81
SHROOM1-205ENST00000488072 PSMC4P43686 418 aa20.11■□□□□ 0.81
SHROOM1-205ENST00000488072 GCLCP48506 637 aaPredicted RBP20.11■□□□□ 0.81
SHROOM1-205ENST00000488072 ERVK-9P63128 1117 aa20.11■□□□□ 0.81
SHROOM1-205ENST00000488072 ERVK-24P63145 666 aa20.11■□□□□ 0.81
SHROOM1-205ENST00000488072 LBX2Q6XYB7 198 aa20.11■□□□□ 0.81
SHROOM1-205ENST00000488072 MORF4L1Q9UBU8 362 aa20.11■□□□□ 0.81
SHROOM1-205ENST00000488072 VWA5AO00534 786 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 SLC4A3P48751 1232 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 ZNF543Q08ER8 600 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 PLS1Q14651 629 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 FAM110CQ1W6H9 321 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 NOM1Q5C9Z4 860 aaKnown RBP20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 OTOP1Q7RTM1 612 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 GPRC5AQ8NFJ5 357 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 DCAF4Q8WV16 495 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 LARP6Q9BRS8 491 aaKnown RBP20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 UPF3BQ9BZI7 483 aaKnown RBP20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 HOXC10Q9NYD6 342 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 BRPF3Q9ULD4 1205 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 SYNPO2Q9UMS6 1093 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 GABRQQ9UN88 632 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 ADAMTS5Q9UNA0 930 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 TRIM17Q9Y577 477 aa20.1■□□□□ 0.81
SHROOM1-205ENST00000488072 IKQ13123 557 aaPredicted RBP20.09■□□□□ 0.81
SHROOM1-205ENST00000488072 PPP4R3BQ5MIZ7 849 aa20.09■□□□□ 0.81
SHROOM1-205ENST00000488072 DHX32Q7L7V1 743 aaKnown RBP20.09■□□□□ 0.81
SHROOM1-205ENST00000488072 CCDC144CPQ8IYA2 1237 aa20.09■□□□□ 0.81
SHROOM1-205ENST00000488072 MOV10L1Q9BXT6 1211 aaKnown RBP20.09■□□□□ 0.81
SHROOM1-205ENST00000488072 RAVER2Q9HCJ3 691 aaKnown RBP20.09■□□□□ 0.81
SHROOM1-205ENST00000488072 FEM1BQ9UK73 627 aa20.09■□□□□ 0.81
SHROOM1-205ENST00000488072 PRR12Q9ULL5 1215 aa20.09■□□□□ 0.81
SHROOM1-205ENST00000488072 RABGAP1Q9Y3P9 1069 aa20.09■□□□□ 0.81
SHROOM1-205ENST00000488072 FMNL1O95466 1100 aaPredicted RBP20.08■□□□□ 0.81
SHROOM1-205ENST00000488072 CASTP20810 708 aaKnown RBP20.08■□□□□ 0.81
SHROOM1-205ENST00000488072 CCDC178Q5BJE1 867 aa20.08■□□□□ 0.81
SHROOM1-205ENST00000488072 CCDC174Q6PII3 467 aa20.08■□□□□ 0.81
SHROOM1-205ENST00000488072 NBPF11Q86T75 865 aa20.08■□□□□ 0.81
SHROOM1-205ENST00000488072 CPXCR1Q8N123 301 aa20.08■□□□□ 0.81
SHROOM1-205ENST00000488072 NUP133Q8WUM0 1156 aa20.08■□□□□ 0.81
SHROOM1-205ENST00000488072 ERO1AQ96HE7 468 aa20.08■□□□□ 0.81
SHROOM1-205ENST00000488072 RIPK3Q9Y572 518 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms