RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 CCNL1Q9UK58 526 aaPredicted RBP18.18■□□□□ 0.5
COL7A1-210ENST00000487017 KDM6BO15054 1643 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 NEDD9Q14511 834 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 LONRF2Q1L5Z9 754 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 TRPC3Q13507 836 aa18.17■□□□□ 0.5
COL7A1-210ENST00000487017 VSIG1Q86XK7 387 aa18.17■□□□□ 0.5
COL7A1-210ENST00000487017 CACNA2D3Q8IZS8 1091 aa18.17■□□□□ 0.5
COL7A1-210ENST00000487017 PPP6R2O75170 966 aa18.17■□□□□ 0.5
COL7A1-210ENST00000487017 JDP2Q8WYK2 163 aa18.17■□□□□ 0.5
COL7A1-210ENST00000487017 LMNTD2Q8IXW0 634 aa18.17■□□□□ 0.5
COL7A1-210ENST00000487017 MAIP1Q8WWC4 291 aa18.17■□□□□ 0.5
COL7A1-210ENST00000487017 RPN1P04843 607 aaKnown RBP18.17■□□□□ 0.5
COL7A1-210ENST00000487017 SCG2P13521 617 aa18.17■□□□□ 0.5
COL7A1-210ENST00000487017 SLC39A14Q15043 492 aa18.17■□□□□ 0.5
COL7A1-210ENST00000487017 USH1GQ495M9 461 aa18.17■□□□□ 0.5
COL7A1-210ENST00000487017 HHATQ5VTY9 493 aa18.17■□□□□ 0.5
COL7A1-210ENST00000487017 ZBTB38Q8NAP3 1195 aaPredicted RBP18.17■□□□□ 0.5
COL7A1-210ENST00000487017 UIMC1Q96RL1 719 aa18.17■□□□□ 0.5
COL7A1-210ENST00000487017 DDX39AO00148 427 aaKnown RBP18.16■□□□□ 0.5
COL7A1-210ENST00000487017 CTNNA1P35221 906 aaKnown RBP18.16■□□□□ 0.5
COL7A1-210ENST00000487017 PCK1P35558 622 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 GUCY2FP51841 1108 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 GNGT1P63211 74 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 PPP1R21Q6ZMI0 780 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 ATP8A2Q9NTI2 1148 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 CARMIL3Q8ND23 1372 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 TMEM2Q9UHN6 1383 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 DDAH1O94760 285 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 SMC1BQ8NDV3 1235 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 U2AF1L4Q8WU68 220 aaKnown RBP18.16■□□□□ 0.5
COL7A1-210ENST00000487017 SYMPKQ92797 1274 aaKnown RBP18.16■□□□□ 0.5
COL7A1-210ENST00000487017 ERBB4Q15303 1308 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 ZWINTO95229 277 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 ZMYM1Q5SVZ6 1142 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 KIFC2Q96AC6 838 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 XRCC5P13010 732 aaKnown RBP18.16■□□□□ 0.5
COL7A1-210ENST00000487017 TCP1P17987 556 aaKnown RBP18.16■□□□□ 0.5
COL7A1-210ENST00000487017 TECP42680 631 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 TTLL7Q6ZT98 887 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 PLEKHA4Q9H4M7 779 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 POLR3EQ9NVU0 708 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 DBNLQ9UJU6 430 aaKnown RBP18.16■□□□□ 0.5
COL7A1-210ENST00000487017 ODF2LQ9ULJ1 636 aa18.16■□□□□ 0.5
COL7A1-210ENST00000487017 SH3BP5O60239 455 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 PPARDQ03181 441 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 PNMA8AQ86V59 439 aaPredicted RBP18.15■□□□□ 0.5
COL7A1-210ENST00000487017 NSUN7Q8NE18 718 aaKnown RBP18.15■□□□□ 0.5
COL7A1-210ENST00000487017 MYO1AQ9UBC5 1043 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 PCCAP05165 728 aaPredicted RBP18.15■□□□□ 0.5
COL7A1-210ENST00000487017 ARHGAP44Q17R89 818 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 GALNT17Q6IS24 598 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 GPBP1Q86WP2 473 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 MED4Q9NPJ6 270 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 USTQ9Y2C2 406 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 OR52Z1P0C646 297 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 STAT1P42224 750 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 RASA3Q14644 834 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 UBE3CQ15386 1083 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 GPR108Q9NPR9 543 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 TLR7Q9NYK1 1049 aaKnown RBP18.15■□□□□ 0.5
COL7A1-210ENST00000487017 KCNK3O14649 394 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 SDR42E1Q8WUS8 393 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 MLH3Q9UHC1 1453 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 IKBKBO14920 756 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 CYP21A2P08686 494 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 ZNF131P52739 623 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 IRX5P78411 483 aaPredicted RBP18.15■□□□□ 0.5
COL7A1-210ENST00000487017 RABGGTAQ92696 567 aa18.15■□□□□ 0.5
COL7A1-210ENST00000487017 LONP1P36776 959 aaKnown RBP18.14■□□□□ 0.49
COL7A1-210ENST00000487017 C11orf57Q6ZUT1 292 aaPredicted RBP18.14■□□□□ 0.49
COL7A1-210ENST00000487017 FAM71BQ8TC56 605 aa18.14■□□□□ 0.49
COL7A1-210ENST00000487017 TBC1D22AQ8WUA7 517 aa18.14■□□□□ 0.49
COL7A1-210ENST00000487017 PPANQ9NQ55 473 aaKnown RBP18.14■□□□□ 0.49
COL7A1-210ENST00000487017 PCDHA5Q9Y5H7 936 aa18.14■□□□□ 0.49
COL7A1-210ENST00000487017 EPN1Q9Y6I3 576 aaPredicted RBP18.14■□□□□ 0.49
COL7A1-210ENST00000487017 GKAP1Q5VSY0 366 aaPredicted RBP18.14■□□□□ 0.49
COL7A1-210ENST00000487017 PCDHB13Q9Y5F0 798 aa18.14■□□□□ 0.49
COL7A1-210ENST00000487017 ATP7BP35670 1465 aa18.14■□□□□ 0.49
COL7A1-210ENST00000487017 MYCLP12524 364 aaPredicted RBP18.14■□□□□ 0.49
COL7A1-210ENST00000487017 COPB1P53618 953 aaKnown RBP18.14■□□□□ 0.49
COL7A1-210ENST00000487017 CLNS1AP54105 237 aaKnown RBP18.14■□□□□ 0.49
COL7A1-210ENST00000487017 DCUN1D2Q6PH85 259 aa18.14■□□□□ 0.49
COL7A1-210ENST00000487017 TAF12Q16514 161 aa18.14■□□□□ 0.49
COL7A1-210ENST00000487017 MCUR1Q96AQ8 359 aa18.14■□□□□ 0.49
COL7A1-210ENST00000487017 HGSO14964 777 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-210ENST00000487017 NEK8Q86SG6 692 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 RGS16O15492 202 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-210ENST00000487017 BUB1O43683 1085 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 GAS8O95995 478 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 ZNF589Q86UQ0 364 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-210ENST00000487017 KRIT1O00522 736 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 NOL3O60936 208 aaKnown RBP18.13■□□□□ 0.49
COL7A1-210ENST00000487017 CIAO1O76071 339 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 CFBP00751 764 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 KRT15P19012 456 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 SNX16P57768 344 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 ITIH3Q06033 890 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 PTGDRQ13258 359 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 CCDC62Q6P9F0 684 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 PROCA1Q8NCQ7 364 aaPredicted RBP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms