RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, human

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HLA-DOB-208	ENST00000475235	GJD2	Q9UKL4	321 aa		13.67	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	CNMD	O75829	334 aa		13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	GJB1	P08034	283 aa		13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	ELN	P15502	786 aa		13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	PPARA	Q07869	468 aa		13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	MCMDC2	Q4G0Z9	681 aa		13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	GPR142	Q7Z601	462 aa		13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	PLEKHH3	Q7Z736	793 aa		13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	PLEKHM2	Q8IWE5	1019 aa		13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	TRMT44	Q8IYL2	757 aa	Known RBP	13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	STK11IP	Q8N1F8	1099 aa		13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	MB21D1	Q8N884	522 aa		13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	NYAP2	Q9P242	653 aa		13.66	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	PEX10	O60683	326 aa		13.65	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	FLOT1	O75955	427 aa		13.65	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	HMGCR	P04035	888 aa		13.65	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	XRCC5	P13010	732 aa	Known RBP	13.65	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	POTEE	Q6S8J3	1075 aa		13.65	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	CCDC129	Q6ZRS4	1044 aa		13.65	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	SPICE1	Q8N0Z3	855 aa		13.65	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	RILPL2	Q969X0	211 aa		13.65	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	PORCN	Q9H237	461 aa		13.65	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	SYNPO2	Q9UMS6	1093 aa		13.65	□□□□□ -0.22
HLA-DOB-208	ENST00000475235	PRDM1	O75626	825 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	RGS2	P41220	211 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	GJA8	P48165	433 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	CENPF	P49454	3210 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	MFAP1	P55081	439 aa	Known RBP	13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	KIAA1755	Q5JYT7	1200 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	PPP4R3B	Q5MIZ7	849 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	BTBD7	Q9P203	1132 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	IVNS1ABP	Q9Y6Y0	642 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	IGKV6D-41	A0A0C4DH26	115 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	HIP1	O00291	1037 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	TSPY3	P0CV98	308 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	TSPY8	P0CW00	308 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	CYP2B6	P20813	491 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	ALX1	Q15699	326 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	MORN1	Q5T089	497 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	WDR78	Q5VTH9	848 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	FAM227B	Q96M60	508 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	UNC93B1	Q9H1C4	597 aa		13.64	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	PLIN4	Q96Q06	1357 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235		A0A0D9SFI3	127 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	FOXP2	O15409	715 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	RAD21	O60216	631 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	TTLL1	O95922	423 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	ZKSCAN1	P17029	563 aa	Predicted RBP	13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	NMI	Q13287	307 aa	Predicted RBP	13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	RGS22	Q8NE09	1264 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	SHCBP1	Q8NEM2	672 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	NEDD1	Q8NHV4	660 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	U2AF1L4	Q8WU68	220 aa	Known RBP	13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	USP6NL	Q92738	828 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	MKL1	Q969V6	931 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	APBA2	Q99767	749 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	SPATC1L	Q9H0A9	340 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	PAK6	Q9NQU5	681 aa	Predicted RBP	13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	MTMR4	Q9NYA4	1195 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	CLIP2	Q9UDT6	1046 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	KCNG1	Q9UIX4	513 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	ANAPC4	Q9UJX5	808 aa		13.63	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	BAZ2A	Q9UIF9	1905 aa	Known RBP	13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	ZMYM6	O95789	1325 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	CCDC171	Q6TFL3	1326 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	RPTOR	Q8N122	1335 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	SLC15A5	A6NIM6	579 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235		F5H6K3	240 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	SGPL1	O95470	568 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	SDS	P20132	328 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	PTPRE	P23469	700 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	ANP32A	P39687	249 aa	Known RBP	13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	TFAP4	Q01664	338 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	KLRC3	Q07444	240 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	MAP2K5	Q13163	448 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	VPS53	Q5VIR6	699 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	PRPF38B	Q5VTL8	546 aa	Known RBP	13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	TRIB2	Q92519	343 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	ATG4C	Q96DT6	458 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	TRIM44	Q96DX7	344 aa	Predicted RBP	13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	CEP95	Q96GE4	821 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	MOV10L1	Q9BXT6	1211 aa	Known RBP	13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	MROH8	Q9H579	483 aa		13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	HMX1	Q9NP08	348 aa	Predicted RBP	13.62	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	TSPY2	A6NKD2	308 aa		13.61	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	STRN	O43815	780 aa		13.61	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	HSPD1	P10809	573 aa	Known RBP	13.61	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	GRB14	Q14449	540 aa		13.61	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	FAM83B	Q5T0W9	1011 aa		13.61	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	SHISA4	Q96DD7	197 aa		13.61	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	DIAPH3	Q9NSV4	1193 aa		13.61	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	PPP1R9A	Q9ULJ8	1098 aa		13.61	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	ADAMTS5	Q9UNA0	930 aa		13.61	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	MGAM	O43451	1857 aa		13.61	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	BRCA2	P51587	3418 aa		13.6	□□□□□ -0.23
HLA-DOB-208	ENST00000475235	SLC25A27	O95847	323 aa		13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms