RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 ZNF143P52747 638 aaPredicted RBP8.07□□□□□ -1.12
CKS1B-204ENST00000471245 PMS1P54277 932 aaKnown RBP8.07□□□□□ -1.12
CKS1B-204ENST00000471245 NKG7Q16617 165 aa8.07□□□□□ -1.12
CKS1B-204ENST00000471245 DYMQ7RTS9 669 aa8.07□□□□□ -1.12
CKS1B-204ENST00000471245 C12orf50Q8NA57 414 aaPredicted RBP8.07□□□□□ -1.12
CKS1B-204ENST00000471245 KRTAP9-2Q9BYQ4 174 aa8.07□□□□□ -1.12
CKS1B-204ENST00000471245 FAM105AQ9NUU6 356 aa8.07□□□□□ -1.12
CKS1B-204ENST00000471245 SUCOQ9UBS9 1254 aaKnown RBP8.07□□□□□ -1.12
CKS1B-204ENST00000471245 ZMYM5Q9UJ78 669 aa8.07□□□□□ -1.12
CKS1B-204ENST00000471245 ACTL7BQ9Y614 415 aa8.07□□□□□ -1.12
CKS1B-204ENST00000471245 EFCAB5A4FU69 1503 aa8.07□□□□□ -1.12
CKS1B-204ENST00000471245 ZFYVE16Q7Z3T8 1539 aa8.07□□□□□ -1.12
CKS1B-204ENST00000471245 DENND4BO75064 1496 aaPredicted RBP8.06□□□□□ -1.12
CKS1B-204ENST00000471245 FHOD3Q2V2M9 1422 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 POGZQ7Z3K3 1410 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.06□□□□□ -1.12
CKS1B-204ENST00000471245 SART1O43290 800 aaKnown RBP8.06□□□□□ -1.12
CKS1B-204ENST00000471245 SUSD5O60279 629 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 ADAM23O75077 832 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 UBOX5O94941 541 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 DRD2P14416 443 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 ASPAP45381 313 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 SSRP1Q08945 709 aaKnown RBP8.06□□□□□ -1.12
CKS1B-204ENST00000471245 NKAPLQ5M9Q1 402 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 PRAMEF13Q5VWM6 474 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 KIAA1211LQ6NV74 962 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 SPATC1Q76KD6 591 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 SMYD4Q8IYR2 804 aaPredicted RBP8.06□□□□□ -1.12
CKS1B-204ENST00000471245 SMARCC1Q92922 1105 aaPredicted RBP8.06□□□□□ -1.12
CKS1B-204ENST00000471245 MYRFLQ96LU7 910 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 SLC6A18Q96N87 628 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 KIF2CQ99661 725 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.06□□□□□ -1.12
CKS1B-204ENST00000471245 TMX1Q9H3N1 280 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 KANSL2Q9H9L4 492 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 FANCLQ9NW38 375 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 PCDHB10Q9UN67 800 aa8.06□□□□□ -1.12
CKS1B-204ENST00000471245 KDM2BQ8NHM5 1336 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 AKNAQ7Z591 1439 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 YEATS2Q9ULM3 1422 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 HECW1Q76N89 1606 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 FAM86C2PA6NEL3 165 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 LRIG2O94898 1065 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 NAT2P11245 290 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 SLC10A6Q3KNW5 377 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 GNPTABQ3T906 1256 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.05□□□□□ -1.12
CKS1B-204ENST00000471245 UBE3DQ7Z6J8 389 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 TMEM192Q8IY95 271 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 MFSD2AQ8NA29 543 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 TP53INP1Q96A56 240 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 DPH2Q9BQC3 489 aaPredicted RBP8.05□□□□□ -1.12
CKS1B-204ENST00000471245 FOXQ1Q9C009 403 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 SAMD9Q5K651 1589 aa8.05□□□□□ -1.12
CKS1B-204ENST00000471245 ARHGEF12Q9NZN5 1544 aa8.04□□□□□ -1.12
CKS1B-204ENST00000471245 ESYT3A0FGR9 886 aa8.04□□□□□ -1.12
CKS1B-204ENST00000471245 IQCA1LA6NCM1 817 aa8.04□□□□□ -1.12
CKS1B-204ENST00000471245 DHX15O43143 795 aaKnown RBP8.04□□□□□ -1.12
CKS1B-204ENST00000471245 DIAPH1O60610 1272 aaKnown RBP8.04□□□□□ -1.12
CKS1B-204ENST00000471245 RNGTTO60942 597 aaKnown RBP8.04□□□□□ -1.12
CKS1B-204ENST00000471245 SQSTM1Q13501 440 aa8.04□□□□□ -1.12
CKS1B-204ENST00000471245 DOC2BQ14184 412 aa8.04□□□□□ -1.12
CKS1B-204ENST00000471245 LONRF2Q1L5Z9 754 aa8.04□□□□□ -1.12
CKS1B-204ENST00000471245 ARMCX6Q7L4S7 300 aa8.04□□□□□ -1.12
CKS1B-204ENST00000471245 KIAA0907Q7Z7F0 614 aaPredicted RBP8.04□□□□□ -1.12
CKS1B-204ENST00000471245 ANKRD13AQ8IZ07 590 aa8.04□□□□□ -1.12
CKS1B-204ENST00000471245 LRRC47Q8N1G4 583 aaKnown RBP8.04□□□□□ -1.12
CKS1B-204ENST00000471245 ARMC10Q8N2F6 343 aa8.04□□□□□ -1.12
CKS1B-204ENST00000471245 ACSS3Q9H6R3 686 aa8.04□□□□□ -1.12
CKS1B-204ENST00000471245 PFDN2Q9UHV9 154 aa8.04□□□□□ -1.12
CKS1B-204ENST00000471245 PCOLCE2Q9UKZ9 415 aa8.04□□□□□ -1.12
CKS1B-204ENST00000471245 SETD1BQ9UPS6 1966 aaKnown RBP8.04□□□□□ -1.12
CKS1B-204ENST00000471245 CLEC3AO75596 197 aa8.03□□□□□ -1.12
CKS1B-204ENST00000471245 GBP1P32455 592 aa8.03□□□□□ -1.12
CKS1B-204ENST00000471245 PREPP48147 710 aa8.03□□□□□ -1.12
CKS1B-204ENST00000471245 RSPO4Q2I0M5 234 aaPredicted RBP8.03□□□□□ -1.12
CKS1B-204ENST00000471245 ZC3H12BQ5HYM0 836 aaKnown RBP8.03□□□□□ -1.12
CKS1B-204ENST00000471245 RNF187Q5TA31 235 aaPredicted RBP8.03□□□□□ -1.12
CKS1B-204ENST00000471245 C16orf86Q6ZW13 317 aa8.03□□□□□ -1.12
CKS1B-204ENST00000471245 PPFIBP1Q86W92 1011 aa8.03□□□□□ -1.12
CKS1B-204ENST00000471245 CLEC10AQ8IUN9 316 aa8.03□□□□□ -1.12
CKS1B-204ENST00000471245 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.03□□□□□ -1.12
CKS1B-204ENST00000471245 FAM20CQ8IXL6 584 aa8.03□□□□□ -1.12
CKS1B-204ENST00000471245 SYNPOQ8N3V7 929 aa8.03□□□□□ -1.12
CKS1B-204ENST00000471245 SGSM3Q96HU1 749 aa8.03□□□□□ -1.12
CKS1B-204ENST00000471245 SSU72Q9NP77 194 aaKnown RBP8.03□□□□□ -1.12
CKS1B-204ENST00000471245 PRKAB1Q9Y478 270 aa8.03□□□□□ -1.12
CKS1B-204ENST00000471245 PTCH2Q9Y6C5 1203 aa8.03□□□□□ -1.12
CKS1B-204ENST00000471245 LTBP4Q8N2S1 1624 aa8.03□□□□□ -1.12
CKS1B-204ENST00000471245 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.03□□□□□ -1.12
CKS1B-204ENST00000471245 NUP153P49790 1475 aaKnown RBP8.02□□□□□ -1.13
CKS1B-204ENST00000471245 MAGI2Q86UL8 1455 aa8.02□□□□□ -1.13
CKS1B-204ENST00000471245 KRTAP9-6A0A140TA67 174 aa8.02□□□□□ -1.13
CKS1B-204ENST00000471245 TAF7LQ5H9L4 462 aa8.02□□□□□ -1.13
CKS1B-204ENST00000471245 PRR23CQ6ZRP0 262 aa8.02□□□□□ -1.13
CKS1B-204ENST00000471245 ZSWIM2Q8NEG5 633 aa8.02□□□□□ -1.13
CKS1B-204ENST00000471245 BAHD1Q8TBE0 780 aaPredicted RBP8.02□□□□□ -1.13
CKS1B-204ENST00000471245 EZH1Q92800 747 aaPredicted RBP8.02□□□□□ -1.13
CKS1B-204ENST00000471245 UTP4Q969X6 686 aaKnown RBP8.02□□□□□ -1.13
CKS1B-204ENST00000471245 FEZ1Q99689 392 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms