RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 GNAT2P19087 354 aa20.93■□□□□ 0.94
COL7A1-208ENST00000470076 TMEM132BQ14DG7 1078 aa20.93■□□□□ 0.94
COL7A1-208ENST00000470076 LRRC26Q2I0M4 334 aa20.93■□□□□ 0.94
COL7A1-208ENST00000470076 TSHZ3Q63HK5 1081 aa20.93■□□□□ 0.94
COL7A1-208ENST00000470076 SAMD1Q6SPF0 538 aaPredicted RBP20.93■□□□□ 0.94
COL7A1-208ENST00000470076 TRPV1Q8NER1 839 aa20.93■□□□□ 0.94
COL7A1-208ENST00000470076 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.93■□□□□ 0.94
COL7A1-208ENST00000470076 MKNK2Q9HBH9 465 aa20.93■□□□□ 0.94
COL7A1-208ENST00000470076 ROBO3Q96MS0 1386 aa20.93■□□□□ 0.94
COL7A1-208ENST00000470076 MINDY4BA8MYZ0 360 aa20.92■□□□□ 0.94
COL7A1-208ENST00000470076 DNM1LO00429 736 aa20.92■□□□□ 0.94
COL7A1-208ENST00000470076 GPAA1O43292 621 aa20.92■□□□□ 0.94
COL7A1-208ENST00000470076 RASA1P20936 1047 aa20.92■□□□□ 0.94
COL7A1-208ENST00000470076 MAGEA10P43363 369 aaPredicted RBP20.92■□□□□ 0.94
COL7A1-208ENST00000470076 SENP6Q9GZR1 1112 aaPredicted RBP20.92■□□□□ 0.94
COL7A1-208ENST00000470076 FBXO28Q9NVF7 368 aa20.92■□□□□ 0.94
COL7A1-208ENST00000470076 PPP1R9AQ9ULJ8 1098 aa20.92■□□□□ 0.94
COL7A1-208ENST00000470076 TTC41PQ6P2S7 1318 aa20.92■□□□□ 0.94
COL7A1-208ENST00000470076 ERC2O15083 957 aa20.91■□□□□ 0.94
COL7A1-208ENST00000470076 RAD21O60216 631 aa20.91■□□□□ 0.94
COL7A1-208ENST00000470076 FAM83BQ5T0W9 1011 aa20.91■□□□□ 0.94
COL7A1-208ENST00000470076 RIOX2Q8IUF8 465 aa20.91■□□□□ 0.94
COL7A1-208ENST00000470076 ARRDC4Q8NCT1 418 aa20.91■□□□□ 0.94
COL7A1-208ENST00000470076 ZNF287Q9HBT7 754 aa20.91■□□□□ 0.94
COL7A1-208ENST00000470076 NYAP2Q9P242 653 aa20.91■□□□□ 0.94
COL7A1-208ENST00000470076 VWA5AO00534 786 aa20.9■□□□□ 0.94
COL7A1-208ENST00000470076 SOX1O00570 391 aaPredicted RBP20.9■□□□□ 0.94
COL7A1-208ENST00000470076 SEPT4O43236 478 aa20.9■□□□□ 0.94
COL7A1-208ENST00000470076 COPB2P35606 906 aa20.9■□□□□ 0.94
COL7A1-208ENST00000470076 TDO2P48775 406 aa20.9■□□□□ 0.94
COL7A1-208ENST00000470076 MAML3Q96JK9 1138 aa20.9■□□□□ 0.94
COL7A1-208ENST00000470076 EPB41L4AQ9HCS5 686 aaPredicted RBP20.9■□□□□ 0.94
COL7A1-208ENST00000470076 PCDHB15Q9Y5E8 787 aa20.9■□□□□ 0.94
COL7A1-208ENST00000470076 STAT3P40763 770 aa20.89■□□□□ 0.93
COL7A1-208ENST00000470076 STK11IPQ8N1F8 1099 aa20.89■□□□□ 0.93
COL7A1-208ENST00000470076 MMP19Q99542 508 aa20.89■□□□□ 0.93
COL7A1-208ENST00000470076 ZNF214Q9UL59 606 aaPredicted RBP20.89■□□□□ 0.93
COL7A1-208ENST00000470076 PATL2C9JE40 543 aaKnown RBP20.88■□□□□ 0.93
COL7A1-208ENST00000470076 F5H6K3 240 aa20.88■□□□□ 0.93
COL7A1-208ENST00000470076 M0R2C6 588 aa20.88■□□□□ 0.93
COL7A1-208ENST00000470076 APPP05067 770 aa20.88■□□□□ 0.93
COL7A1-208ENST00000470076 KLRC3Q07444 240 aa20.88■□□□□ 0.93
COL7A1-208ENST00000470076 KCTD2Q14681 263 aa20.88■□□□□ 0.93
COL7A1-208ENST00000470076 TDHQ8IZJ6 230 aa20.88■□□□□ 0.93
COL7A1-208ENST00000470076 ZNF444Q8N0Y2 327 aaPredicted RBP20.88■□□□□ 0.93
COL7A1-208ENST00000470076 LRCH3Q96II8 777 aa20.88■□□□□ 0.93
COL7A1-208ENST00000470076 UBE2OQ9C0C9 1292 aaKnown RBP20.88■□□□□ 0.93
COL7A1-208ENST00000470076 NRBP1Q9UHY1 535 aa20.88■□□□□ 0.93
COL7A1-208ENST00000470076 MYH4Q9Y623 1939 aa20.88■□□□□ 0.93
COL7A1-208ENST00000470076 PLXNA1Q9UIW2 1896 aa20.88■□□□□ 0.93
COL7A1-208ENST00000470076 KBTBD13C9JR72 458 aa20.87■□□□□ 0.93
COL7A1-208ENST00000470076 LRIT3Q3SXY7 679 aa20.87■□□□□ 0.93
COL7A1-208ENST00000470076 IFNL3Q8IZI9 196 aa20.87■□□□□ 0.93
COL7A1-208ENST00000470076 REPS2Q8NFH8 660 aa20.87■□□□□ 0.93
COL7A1-208ENST00000470076 PI4K2BQ8TCG2 481 aa20.87■□□□□ 0.93
COL7A1-208ENST00000470076 SLF1Q9BQI6 1058 aa20.87■□□□□ 0.93
COL7A1-208ENST00000470076 NACAP1Q9BZK3 213 aa20.87■□□□□ 0.93
COL7A1-208ENST00000470076 DIS3Q9Y2L1 958 aaKnown RBP20.87■□□□□ 0.93
COL7A1-208ENST00000470076 IGKV6D-41A0A0C4DH26 115 aa20.86■□□□□ 0.93
COL7A1-208ENST00000470076 PRAMEF19Q5SWL8 479 aa20.86■□□□□ 0.93
COL7A1-208ENST00000470076 GJC2Q5T442 439 aaPredicted RBP20.86■□□□□ 0.93
COL7A1-208ENST00000470076 GPR153Q6NV75 609 aa20.86■□□□□ 0.93
COL7A1-208ENST00000470076 NUP88Q99567 741 aaPredicted RBP20.86■□□□□ 0.93
COL7A1-208ENST00000470076 TEX13BQ9BXU2 312 aa20.86■□□□□ 0.93
COL7A1-208ENST00000470076 CLIP2Q9UDT6 1046 aa20.86■□□□□ 0.93
COL7A1-208ENST00000470076 SYNPO2Q9UMS6 1093 aa20.86■□□□□ 0.93
COL7A1-208ENST00000470076 SMCHD1A6NHR9 2005 aa20.85■□□□□ 0.93
COL7A1-208ENST00000470076 NDUFB10O96000 172 aa20.85■□□□□ 0.93
COL7A1-208ENST00000470076 PGK2P07205 417 aa20.85■□□□□ 0.93
COL7A1-208ENST00000470076 ATN1P54259 1190 aaPredicted RBP20.85■□□□□ 0.93
COL7A1-208ENST00000470076 ZNF792Q3KQV3 632 aa20.85■□□□□ 0.93
COL7A1-208ENST00000470076 ANO1Q5XXA6 986 aa20.85■□□□□ 0.93
COL7A1-208ENST00000470076 PRPF38AQ8NAV1 312 aaKnown RBP20.85■□□□□ 0.93
COL7A1-208ENST00000470076 MKL1Q969V6 931 aa20.85■□□□□ 0.93
COL7A1-208ENST00000470076 TINF2Q9BSI4 451 aa20.85■□□□□ 0.93
COL7A1-208ENST00000470076 FSD1Q9BTV5 496 aa20.85■□□□□ 0.93
COL7A1-208ENST00000470076 PRDM1O75626 825 aa20.84■□□□□ 0.93
COL7A1-208ENST00000470076 MX1P20591 662 aa20.84■□□□□ 0.93
COL7A1-208ENST00000470076 PDE4BQ07343 736 aa20.84■□□□□ 0.93
COL7A1-208ENST00000470076 OTUD7AQ8TE49 926 aaPredicted RBP20.84■□□□□ 0.93
COL7A1-208ENST00000470076 SEC62Q99442 399 aaKnown RBP20.84■□□□□ 0.93
COL7A1-208ENST00000470076 MTMR4Q9NYA4 1195 aa20.84■□□□□ 0.93
COL7A1-208ENST00000470076 TTLL1O95922 423 aa20.83■□□□□ 0.93
COL7A1-208ENST00000470076 SLC3A2P08195 630 aaKnown RBP20.83■□□□□ 0.93
COL7A1-208ENST00000470076 RRP1P56182 461 aaKnown RBP20.83■□□□□ 0.93
COL7A1-208ENST00000470076 RTP1P59025 263 aa20.83■□□□□ 0.93
COL7A1-208ENST00000470076 MDM2Q00987 491 aaPredicted RBP20.83■□□□□ 0.93
COL7A1-208ENST00000470076 ZMYM1Q5SVZ6 1142 aa20.83■□□□□ 0.93
COL7A1-208ENST00000470076 SNRNP48Q6IEG0 339 aaKnown RBP20.83■□□□□ 0.93
COL7A1-208ENST00000470076 CEP95Q96GE4 821 aa20.83■□□□□ 0.93
COL7A1-208ENST00000470076 LBHD1Q9BQE6 289 aaPredicted RBP20.83■□□□□ 0.93
COL7A1-208ENST00000470076 NAPBQ9H115 298 aa20.83■□□□□ 0.93
COL7A1-208ENST00000470076 PRKAG2Q9UGJ0 569 aa20.83■□□□□ 0.93
COL7A1-208ENST00000470076 ATP2A1O14983 1001 aa20.82■□□□□ 0.92
COL7A1-208ENST00000470076 ZBED4O75132 1171 aa20.82■□□□□ 0.92
COL7A1-208ENST00000470076 MYCNP04198 464 aaPredicted RBP20.82■□□□□ 0.92
COL7A1-208ENST00000470076 RARBP10826 455 aa20.82■□□□□ 0.92
COL7A1-208ENST00000470076 LRRC41Q15345 812 aa20.82■□□□□ 0.92
COL7A1-208ENST00000470076 FAM47AQ5JRC9 791 aa20.82■□□□□ 0.92
COL7A1-208ENST00000470076 SLC39A5Q6ZMH5 540 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms