RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 ATP2A1O14983 1001 aa16.21■□□□□ 0.19
CHD3-207ENST00000466233 RNF113AO15541 343 aaKnown RBP16.21■□□□□ 0.19
CHD3-207ENST00000466233 CNGA1P29973 690 aa16.21■□□□□ 0.19
CHD3-207ENST00000466233 SNX17Q15036 470 aa16.21■□□□□ 0.19
CHD3-207ENST00000466233 SLFNL1Q499Z3 407 aa16.21■□□□□ 0.19
CHD3-207ENST00000466233 C20orf194Q5TEA3 1177 aa16.21■□□□□ 0.19
CHD3-207ENST00000466233 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.21■□□□□ 0.19
CHD3-207ENST00000466233 NCAPG2Q86XI2 1143 aa16.21■□□□□ 0.19
CHD3-207ENST00000466233 TICAM2Q86XR7 235 aa16.21■□□□□ 0.19
CHD3-207ENST00000466233 SPICE1Q8N0Z3 855 aa16.21■□□□□ 0.19
CHD3-207ENST00000466233 MKL1Q969V6 931 aa16.21■□□□□ 0.19
CHD3-207ENST00000466233 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.21■□□□□ 0.19
CHD3-207ENST00000466233 UBE2OQ9C0C9 1292 aaKnown RBP16.21■□□□□ 0.19
CHD3-207ENST00000466233 SENP6Q9GZR1 1112 aaPredicted RBP16.21■□□□□ 0.19
CHD3-207ENST00000466233 CYP2D7A0A087X1C5 515 aa16.2■□□□□ 0.18
CHD3-207ENST00000466233 ERC2O15083 957 aa16.2■□□□□ 0.18
CHD3-207ENST00000466233 STAT3P40763 770 aa16.2■□□□□ 0.18
CHD3-207ENST00000466233 PLS1Q14651 629 aa16.2■□□□□ 0.18
CHD3-207ENST00000466233 KCTD2Q14681 263 aa16.2■□□□□ 0.18
CHD3-207ENST00000466233 PRPF38AQ8NAV1 312 aaKnown RBP16.2■□□□□ 0.18
CHD3-207ENST00000466233 REPS2Q8NFH8 660 aa16.2■□□□□ 0.18
CHD3-207ENST00000466233 OSBP2Q969R2 916 aa16.2■□□□□ 0.18
CHD3-207ENST00000466233 MKNK2Q9HBH9 465 aa16.2■□□□□ 0.18
CHD3-207ENST00000466233 ZNF214Q9UL59 606 aaPredicted RBP16.2■□□□□ 0.18
CHD3-207ENST00000466233 PATL2C9JE40 543 aaKnown RBP16.19■□□□□ 0.18
CHD3-207ENST00000466233 KBTBD13C9JR72 458 aa16.19■□□□□ 0.18
CHD3-207ENST00000466233 SOX1O00570 391 aaPredicted RBP16.19■□□□□ 0.18
CHD3-207ENST00000466233 FDX1P10109 184 aa16.19■□□□□ 0.18
CHD3-207ENST00000466233 SYN1P17600 705 aa16.19■□□□□ 0.18
CHD3-207ENST00000466233 RASA1P20936 1047 aa16.19■□□□□ 0.18
CHD3-207ENST00000466233 PPP4R3BQ5MIZ7 849 aa16.19■□□□□ 0.18
CHD3-207ENST00000466233 LAMA3Q16787 3333 aa16.18■□□□□ 0.18
CHD3-207ENST00000466233 IGKV6D-41A0A0C4DH26 115 aa16.18■□□□□ 0.18
CHD3-207ENST00000466233 SMARCA5O60264 1052 aaPredicted RBP16.18■□□□□ 0.18
CHD3-207ENST00000466233 OAZ1P54368 228 aa16.18■□□□□ 0.18
CHD3-207ENST00000466233 ZNF792Q3KQV3 632 aa16.18■□□□□ 0.18
CHD3-207ENST00000466233 FAM109BQ6ICB4 259 aaPredicted RBP16.18■□□□□ 0.18
CHD3-207ENST00000466233 CLEC10AQ8IUN9 316 aa16.18■□□□□ 0.18
CHD3-207ENST00000466233 MMP19Q99542 508 aa16.18■□□□□ 0.18
CHD3-207ENST00000466233 LBHD1Q9BQE6 289 aaPredicted RBP16.18■□□□□ 0.18
CHD3-207ENST00000466233 TINF2Q9BSI4 451 aa16.18■□□□□ 0.18
CHD3-207ENST00000466233 TEX13BQ9BXU2 312 aa16.18■□□□□ 0.18
CHD3-207ENST00000466233 NACAP1Q9BZK3 213 aa16.18■□□□□ 0.18
CHD3-207ENST00000466233 PRKAG2Q9UGJ0 569 aa16.18■□□□□ 0.18
CHD3-207ENST00000466233 MYH7P12883 1935 aa16.17■□□□□ 0.18
CHD3-207ENST00000466233 F5H6K3 240 aa16.17■□□□□ 0.18
CHD3-207ENST00000466233 SMIM22K7EJ46 135 aa16.17■□□□□ 0.18
CHD3-207ENST00000466233 GPAA1O43292 621 aa16.17■□□□□ 0.18
CHD3-207ENST00000466233 CHGBP05060 677 aa16.17■□□□□ 0.18
CHD3-207ENST00000466233 KLRC3Q07444 240 aa16.17■□□□□ 0.18
CHD3-207ENST00000466233 SLC39A5Q6ZMH5 540 aa16.17■□□□□ 0.18
CHD3-207ENST00000466233 ZNF467Q7Z7K2 595 aaPredicted RBP16.17■□□□□ 0.18
CHD3-207ENST00000466233 ZNF444Q8N0Y2 327 aaPredicted RBP16.17■□□□□ 0.18
CHD3-207ENST00000466233 GMCL1P1Q8NEA9 526 aa16.17■□□□□ 0.18
CHD3-207ENST00000466233 LRCH3Q96II8 777 aa16.17■□□□□ 0.18
CHD3-207ENST00000466233 SLF1Q9BQI6 1058 aa16.17■□□□□ 0.18
CHD3-207ENST00000466233 MYH8P13535 1937 aa16.17■□□□□ 0.18
CHD3-207ENST00000466233 PLIN4Q96Q06 1357 aa16.16■□□□□ 0.18
CHD3-207ENST00000466233 GREB1LQ9C091 1923 aaPredicted RBP16.16■□□□□ 0.18
CHD3-207ENST00000466233 BAZ2AQ9UIF9 1905 aaKnown RBP16.16■□□□□ 0.18
CHD3-207ENST00000466233 SLC3A2P08195 630 aaKnown RBP16.16■□□□□ 0.18
CHD3-207ENST00000466233 RARBP10826 455 aa16.16■□□□□ 0.18
CHD3-207ENST00000466233 FAM83BQ5T0W9 1011 aa16.16■□□□□ 0.18
CHD3-207ENST00000466233 MAMDC4Q6UXC1 1216 aa16.16■□□□□ 0.18
CHD3-207ENST00000466233 TSEN34Q9BSV6 310 aaKnown RBP16.16■□□□□ 0.18
CHD3-207ENST00000466233 BCL11AQ9H165 835 aa16.16■□□□□ 0.18
CHD3-207ENST00000466233 FBXO28Q9NVF7 368 aa16.16■□□□□ 0.18
CHD3-207ENST00000466233 MTMR4Q9NYA4 1195 aa16.16■□□□□ 0.18
CHD3-207ENST00000466233 FEM1BQ9UK73 627 aa16.16■□□□□ 0.18
CHD3-207ENST00000466233 PHF24Q9UPV7 400 aa16.16■□□□□ 0.18
CHD3-207ENST00000466233 FRMPD3Q5JV73 1810 aa16.16■□□□□ 0.18
CHD3-207ENST00000466233 SYNGAP1Q96PV0 1343 aa16.16■□□□□ 0.18
CHD3-207ENST00000466233 MINDY4BA8MYZ0 360 aa16.15■□□□□ 0.18
CHD3-207ENST00000466233 TTLL1O95922 423 aa16.15■□□□□ 0.18
CHD3-207ENST00000466233 NDUFB10O96000 172 aa16.15■□□□□ 0.18
CHD3-207ENST00000466233 TDO2P48775 406 aa16.15■□□□□ 0.18
CHD3-207ENST00000466233 RTP1P59025 263 aa16.15■□□□□ 0.18
CHD3-207ENST00000466233 PDE4BQ07343 736 aa16.15■□□□□ 0.18
CHD3-207ENST00000466233 LRRC41Q15345 812 aa16.15■□□□□ 0.18
CHD3-207ENST00000466233 RNF180Q86T96 592 aa16.15■□□□□ 0.18
CHD3-207ENST00000466233 IFNL3Q8IZI9 196 aa16.15■□□□□ 0.18
CHD3-207ENST00000466233 FBXO40Q9UH90 709 aa16.15■□□□□ 0.18
CHD3-207ENST00000466233 PARP14Q460N5 1801 aa16.15■□□□□ 0.18
CHD3-207ENST00000466233 DNAJC25-GNG10A0A024R161 153 aa16.14■□□□□ 0.17
CHD3-207ENST00000466233 ZBED4O75132 1171 aa16.14■□□□□ 0.17
CHD3-207ENST00000466233 AKR1A1P14550 325 aa16.14■□□□□ 0.17
CHD3-207ENST00000466233 GJC2Q5T442 439 aaPredicted RBP16.14■□□□□ 0.17
CHD3-207ENST00000466233 CHST13Q8NET6 341 aa16.14■□□□□ 0.17
CHD3-207ENST00000466233 NEDD1Q8NHV4 660 aa16.14■□□□□ 0.17
CHD3-207ENST00000466233 PI4K2BQ8TCG2 481 aa16.14■□□□□ 0.17
CHD3-207ENST00000466233 SLC38A10Q9HBR0 1119 aa16.14■□□□□ 0.17
CHD3-207ENST00000466233 EPB41L4AQ9HCS5 686 aaPredicted RBP16.14■□□□□ 0.17
CHD3-207ENST00000466233 CNPY2Q9Y2B0 182 aa16.14■□□□□ 0.17
CHD3-207ENST00000466233 STXBP5LQ9Y2K9 1186 aa16.14■□□□□ 0.17
CHD3-207ENST00000466233 POTEB2H3BUK9 544 aa16.13■□□□□ 0.17
CHD3-207ENST00000466233 PLA2G6O60733 806 aa16.13■□□□□ 0.17
CHD3-207ENST00000466233 APPP05067 770 aa16.13■□□□□ 0.17
CHD3-207ENST00000466233 ZNF865P0CJ78 1059 aaPredicted RBP16.13■□□□□ 0.17
CHD3-207ENST00000466233 AAMPQ13685 434 aa16.13■□□□□ 0.17
CHD3-207ENST00000466233 ZMYM1Q5SVZ6 1142 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms