RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 MAML3Q96JK9 1138 aa27.22■■□□□ 1.95
USP4-208ENST00000464168 KANSL2Q9H9L4 492 aa27.22■■□□□ 1.95
USP4-208ENST00000464168 SLC39A5Q6ZMH5 540 aa27.21■■□□□ 1.95
USP4-208ENST00000464168 DDRGK1Q96HY6 314 aa27.21■■□□□ 1.95
USP4-208ENST00000464168 PUS7LQ9H0K6 701 aaKnown RBP27.21■■□□□ 1.95
USP4-208ENST00000464168 CHMP4BQ9H444 224 aaKnown RBP27.21■■□□□ 1.95
USP4-208ENST00000464168 FBXO28Q9NVF7 368 aa27.21■■□□□ 1.95
USP4-208ENST00000464168 BAZ2AQ9UIF9 1905 aaKnown RBP27.21■■□□□ 1.95
USP4-208ENST00000464168 KBTBD13C9JR72 458 aa27.2■■□□□ 1.94
USP4-208ENST00000464168 SLC25A27O95847 323 aa27.2■■□□□ 1.94
USP4-208ENST00000464168 ATP11BQ9Y2G3 1177 aa27.2■■□□□ 1.94
USP4-208ENST00000464168 LRRCC1Q9C099 1032 aa27.19■■□□□ 1.94
USP4-208ENST00000464168 PRKAG2Q9UGJ0 569 aa27.19■■□□□ 1.94
USP4-208ENST00000464168 POTEB2H3BUK9 544 aa27.18■■□□□ 1.94
USP4-208ENST00000464168 SMARCA5O60264 1052 aaPredicted RBP27.18■■□□□ 1.94
USP4-208ENST00000464168 MYCNP04198 464 aaPredicted RBP27.18■■□□□ 1.94
USP4-208ENST00000464168 LRRC41Q15345 812 aa27.18■■□□□ 1.94
USP4-208ENST00000464168 ZSCAN25Q6NSZ9 544 aa27.18■■□□□ 1.94
USP4-208ENST00000464168 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.18■■□□□ 1.94
USP4-208ENST00000464168 VWA5AO00534 786 aa27.17■■□□□ 1.94
USP4-208ENST00000464168 ADCYAP1R1P41586 468 aa27.17■■□□□ 1.94
USP4-208ENST00000464168 SNX17Q15036 470 aa27.17■■□□□ 1.94
USP4-208ENST00000464168 RIOX2Q8IUF8 465 aa27.17■■□□□ 1.94
USP4-208ENST00000464168 MMP19Q99542 508 aa27.17■■□□□ 1.94
USP4-208ENST00000464168 PPP1R9AQ9ULJ8 1098 aa27.17■■□□□ 1.94
USP4-208ENST00000464168 MYH8P13535 1937 aa27.16■■□□□ 1.94
USP4-208ENST00000464168 PGK2P07205 417 aa27.16■■□□□ 1.94
USP4-208ENST00000464168 STAT3P40763 770 aa27.16■■□□□ 1.94
USP4-208ENST00000464168 FAM47AQ5JRC9 791 aa27.16■■□□□ 1.94
USP4-208ENST00000464168 FAM109BQ6ICB4 259 aaPredicted RBP27.16■■□□□ 1.94
USP4-208ENST00000464168 STRBPQ96SI9 672 aaKnown RBP27.16■■□□□ 1.94
USP4-208ENST00000464168 GOPCQ9HD26 462 aa27.16■■□□□ 1.94
USP4-208ENST00000464168 NRBP1Q9UHY1 535 aa27.16■■□□□ 1.94
USP4-208ENST00000464168 RCAN3Q9UKA8 241 aa27.16■■□□□ 1.94
USP4-208ENST00000464168 UNC80Q8N2C7 3258 aa27.16■■□□□ 1.94
USP4-208ENST00000464168 TRIM60Q495X7 471 aa27.15■■□□□ 1.94
USP4-208ENST00000464168 FAM83BQ5T0W9 1011 aa27.15■■□□□ 1.94
USP4-208ENST00000464168 REPS2Q8NFH8 660 aa27.15■■□□□ 1.94
USP4-208ENST00000464168 FERMT2Q96AC1 680 aa27.15■■□□□ 1.94
USP4-208ENST00000464168 ZNF214Q9UL59 606 aaPredicted RBP27.15■■□□□ 1.94
USP4-208ENST00000464168 PARP14Q460N5 1801 aa27.14■■□□□ 1.94
USP4-208ENST00000464168 RAD21O60216 631 aa27.14■■□□□ 1.94
USP4-208ENST00000464168 ZNF792Q3KQV3 632 aa27.14■■□□□ 1.94
USP4-208ENST00000464168 SBK1Q52WX2 424 aa27.14■■□□□ 1.94
USP4-208ENST00000464168 C20orf194Q5TEA3 1177 aa27.14■■□□□ 1.94
USP4-208ENST00000464168 TINF2Q9BSI4 451 aa27.14■■□□□ 1.94
USP4-208ENST00000464168 ARPP21Q9UBL0 812 aaPredicted RBP27.14■■□□□ 1.94
USP4-208ENST00000464168 DIS3Q9Y2L1 958 aaKnown RBP27.14■■□□□ 1.94
USP4-208ENST00000464168 KCTD2Q14681 263 aa27.13■■□□□ 1.93
USP4-208ENST00000464168 C1orf53Q5VUE5 145 aa27.13■■□□□ 1.93
USP4-208ENST00000464168 ECHDC1Q9NTX5 307 aa27.13■■□□□ 1.93
USP4-208ENST00000464168 GSG1L2A8MUP6 293 aa27.12■■□□□ 1.93
USP4-208ENST00000464168 TAL1P17542 331 aaPredicted RBP27.12■■□□□ 1.93
USP4-208ENST00000464168 RASA1P20936 1047 aa27.12■■□□□ 1.93
USP4-208ENST00000464168 XPNPEP3Q9NQH7 507 aa27.12■■□□□ 1.93
USP4-208ENST00000464168 PRDM5Q9NQX1 630 aaPredicted RBP27.12■■□□□ 1.93
USP4-208ENST00000464168 PDLIM7Q9NR12 457 aa27.12■■□□□ 1.93
USP4-208ENST00000464168 PHF24Q9UPV7 400 aa27.12■■□□□ 1.93
USP4-208ENST00000464168 ZNFX1Q9P2E3 1918 aaKnown RBP27.12■■□□□ 1.93
USP4-208ENST00000464168 SMCHD1A6NHR9 2005 aa27.11■■□□□ 1.93
USP4-208ENST00000464168 RARBP10826 455 aa27.11■■□□□ 1.93
USP4-208ENST00000464168 SHHQ15465 462 aa27.11■■□□□ 1.93
USP4-208ENST00000464168 SH3RF1Q7Z6J0 888 aa27.11■■□□□ 1.93
USP4-208ENST00000464168 BADQ92934 168 aa27.11■■□□□ 1.93
USP4-208ENST00000464168 GUCD1Q96NT3 240 aa27.11■■□□□ 1.93
USP4-208ENST00000464168 NUP88Q99567 741 aaPredicted RBP27.11■■□□□ 1.93
USP4-208ENST00000464168 TRIM43BA6NCK2 446 aa27.1■■□□□ 1.93
USP4-208ENST00000464168 ZNF865P0CJ78 1059 aaPredicted RBP27.1■■□□□ 1.93
USP4-208ENST00000464168 COPB2P35606 906 aa27.1■■□□□ 1.93
USP4-208ENST00000464168 C9orf50Q5SZB4 431 aa27.1■■□□□ 1.93
USP4-208ENST00000464168 GIMAP6Q6P9H5 292 aa27.1■■□□□ 1.93
USP4-208ENST00000464168 STK11IPQ8N1F8 1099 aa27.1■■□□□ 1.93
USP4-208ENST00000464168 OSBP2Q969R2 916 aa27.1■■□□□ 1.93
USP4-208ENST00000464168 TRIM43Q96BQ3 446 aaPredicted RBP27.1■■□□□ 1.93
USP4-208ENST00000464168 NYAP2Q9P242 653 aa27.1■■□□□ 1.93
USP4-208ENST00000464168 COL11A1P12107 1806 aaPredicted RBP27.1■■□□□ 1.93
USP4-208ENST00000464168 MYH7P12883 1935 aa27.1■■□□□ 1.93
USP4-208ENST00000464168 LTBP2Q14767 1821 aa27.09■■□□□ 1.93
USP4-208ENST00000464168 PGK1P00558 417 aa27.09■■□□□ 1.93
USP4-208ENST00000464168 TLE2Q04725 743 aa27.09■■□□□ 1.93
USP4-208ENST00000464168 KBTBD3Q8NAB2 608 aa27.09■■□□□ 1.93
USP4-208ENST00000464168 SLF1Q9BQI6 1058 aa27.09■■□□□ 1.93
USP4-208ENST00000464168 MKNK2Q9HBH9 465 aa27.09■■□□□ 1.93
USP4-208ENST00000464168 MINDY4BA8MYZ0 360 aa27.08■■□□□ 1.93
USP4-208ENST00000464168 F5H6K3 240 aa27.08■■□□□ 1.93
USP4-208ENST00000464168 KLRC3Q07444 240 aa27.08■■□□□ 1.93
USP4-208ENST00000464168 FAM161BQ96MY7 647 aa27.08■■□□□ 1.93
USP4-208ENST00000464168 NDUFB10O96000 172 aa27.07■■□□□ 1.92
USP4-208ENST00000464168 RNF180Q86T96 592 aa27.07■■□□□ 1.92
USP4-208ENST00000464168 APPBP2Q92624 585 aa27.07■■□□□ 1.92
USP4-208ENST00000464168 TEX13BQ9BXU2 312 aa27.07■■□□□ 1.92
USP4-208ENST00000464168 RIPK3Q9Y572 518 aa27.07■■□□□ 1.92
USP4-208ENST00000464168 ROBO3Q96MS0 1386 aa27.07■■□□□ 1.92
USP4-208ENST00000464168 RNF113AO15541 343 aaKnown RBP27.06■■□□□ 1.92
USP4-208ENST00000464168 TSHZ3Q63HK5 1081 aa27.06■■□□□ 1.92
USP4-208ENST00000464168 SNRNP48Q6IEG0 339 aaKnown RBP27.06■■□□□ 1.92
USP4-208ENST00000464168 PRPF38AQ8NAV1 312 aaKnown RBP27.06■■□□□ 1.92
USP4-208ENST00000464168 DCTPP1Q9H773 170 aa27.06■■□□□ 1.92
USP4-208ENST00000464168 GREB1LQ9C091 1923 aaPredicted RBP27.06■■□□□ 1.92
USP4-208ENST00000464168 IGKV6D-41A0A0C4DH26 115 aa27.05■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms