RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SSBP05455 408 aaKnown RBP eCLIP13.14□□□□□ -0.31
CPSF3-202ENST00000460593 PLEKP08567 350 aaPredicted RBP13.14□□□□□ -0.31
CPSF3-202ENST00000460593 CCDC172P0C7W6 258 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 FECHP22830 423 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 MLXIPQ9HAP2 919 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 EPB41L4AQ9HCS5 686 aaPredicted RBP13.14□□□□□ -0.31
CPSF3-202ENST00000460593 MYO1AQ9UBC5 1043 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 MST1RQ04912 1400 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 NCK2O43639 380 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 ZFYP08048 801 aaPredicted RBP13.14□□□□□ -0.31
CPSF3-202ENST00000460593 ATP6V1AP38606 617 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 KANK3Q6NY19 840 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 AENQ8WTP8 325 aaKnown RBP13.14□□□□□ -0.31
CPSF3-202ENST00000460593 RAPGEF4Q8WZA2 1011 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 ORAI2Q96SN7 254 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 TRIM75PA6NK02 468 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 ERCC3P19447 782 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 ADD2P35612 726 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 TRIM22Q8IYM9 498 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 KIRREL3Q8IZU9 778 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 ANKRD13CQ8N6S4 541 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 ARMT1Q9H993 441 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 LIMA1Q9UHB6 759 aaKnown RBP13.13□□□□□ -0.31
CPSF3-202ENST00000460593 LUC7L2Q9Y383 392 aaKnown RBP13.13□□□□□ -0.31
CPSF3-202ENST00000460593 BACH1O14867 736 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 ADAMTS3O15072 1205 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 TUBBP07437 444 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 PHKG2P15735 406 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 IFNAR1P17181 557 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 TUBB4BP68371 445 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 PAK1Q13153 545 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 PAPD7Q5XG87 772 aaKnown RBP13.13□□□□□ -0.31
CPSF3-202ENST00000460593 NFRKBQ6P4R8 1299 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 SH3RF1Q7Z6J0 888 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 IRF2BP1Q8IU81 584 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 OTUD6BQ8N6M0 293 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 HELBQ8NG08 1087 aaPredicted RBP13.13□□□□□ -0.31
CPSF3-202ENST00000460593 OR8K1Q8NGG5 319 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 HAUS4Q9H6D7 363 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 FAM184BQ9ULE4 1060 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 CAPN6Q9Y6Q1 641 aa13.13□□□□□ -0.31
CPSF3-202ENST00000460593 NFAT5O94916 1531 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 PRCPP42785 496 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 MMP14P50281 582 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 SF3A3Q12874 501 aaKnown RBP eCLIP13.12□□□□□ -0.311e-7■■■□□ 16.1
CPSF3-202ENST00000460593 CEP83Q9Y592 693 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 ITIH6Q6UXX5 1313 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 FRMD3A2A2Y4 597 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 B4DLN1 442 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 PARP1P09874 1014 aaKnown RBP13.12□□□□□ -0.31
CPSF3-202ENST00000460593 FNTAP49354 379 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 ELOA2Q8IYF1 753 aaPredicted RBP13.12□□□□□ -0.31
CPSF3-202ENST00000460593 CNPY4Q8N129 248 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 CRACR2BQ8N4Y2 399 aaPredicted RBP13.12□□□□□ -0.31
CPSF3-202ENST00000460593 KCNH5Q8NCM2 988 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 TMEM87BQ96K49 555 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 RNPC3Q96LT9 517 aaKnown RBP13.12□□□□□ -0.31
CPSF3-202ENST00000460593 PCMTD1Q96MG8 357 aaPredicted RBP13.12□□□□□ -0.31
CPSF3-202ENST00000460593 FOXP1Q9H334 677 aaPredicted RBP13.12□□□□□ -0.31
CPSF3-202ENST00000460593 LRWD1Q9UFC0 647 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 TBX22Q9Y458 520 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 UBR1Q8IWV7 1749 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 ECM29Q5VYK3 1845 aa13.12□□□□□ -0.31
CPSF3-202ENST00000460593 ZNF579Q8NAF0 562 aaKnown RBP13.12□□□□□ -0.31
CPSF3-202ENST00000460593 MOCS3O95396 460 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 FAM153BP0C7A2 387 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 FAM153CQ494X1 144 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 METTL24Q5JXM2 366 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 GBP6Q6ZN66 633 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 PRPF38AQ8NAV1 312 aaKnown RBP13.11□□□□□ -0.31
CPSF3-202ENST00000460593 ZIM3Q96PE6 472 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 GSDMAQ96QA5 445 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 SH3GL2Q99962 352 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 NAPBQ9H115 298 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 AATFQ9NY61 560 aaKnown RBP eCLIP13.11□□□□□ -0.31
CPSF3-202ENST00000460593 FAM153AQ9UHL3 310 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 TARSL2A2RTX5 802 aaKnown RBP13.11□□□□□ -0.31
CPSF3-202ENST00000460593 ATP2C2O75185 946 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 KIAA0754O94854 1291 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 MBD4O95243 580 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 PDE6AP16499 860 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 PHKA1P46020 1223 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 GUCY2FP51841 1108 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 RNASE9P60153 205 aaKnown RBP13.11□□□□□ -0.31
CPSF3-202ENST00000460593 PTGDRQ13258 359 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 SGMS1Q86VZ5 419 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 CREG2Q8IUH2 290 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 MB21D1Q8N884 522 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 MS4A14Q96JA4 679 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 RUFY1Q96T51 708 aa13.11□□□□□ -0.31
CPSF3-202ENST00000460593 ZNF263O14978 683 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 CKAP4Q07065 602 aaKnown RBP13.1□□□□□ -0.31
CPSF3-202ENST00000460593 NNTQ13423 1086 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 WTAPQ15007 396 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 TRADDQ15628 312 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 CABS1Q96KC9 395 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 NHEJ1Q9H9Q4 299 aaPredicted RBP13.1□□□□□ -0.31
CPSF3-202ENST00000460593 WDR19Q8NEZ3 1342 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 MCM3P25205 808 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 HDLBPQ00341 1268 aaKnown RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms