RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 TSNAXIP1Q2TAA8 658 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 CABS1Q96KC9 395 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 CAPN7Q9Y6W3 813 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 PNPLA7Q6ZV29 1317 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 ATP2C2O75185 946 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 PDIA3P30101 505 aaKnown RBP6.93□□□□□ -1.3
VPS13D-202ENST00000460333 TOB2Q14106 344 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-202ENST00000460333 NFIXQ14938 502 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 DHX37Q8IY37 1157 aaKnown RBP6.93□□□□□ -1.3
VPS13D-202ENST00000460333 CRACR2BQ8N4Y2 399 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-202ENST00000460333 SUPT20HQ8NEM7 779 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 CELF1Q92879 486 aaKnown RBP6.93□□□□□ -1.3
VPS13D-202ENST00000460333 NCAPGQ9BPX3 1015 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 KAT14Q9H8E8 782 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-202ENST00000460333 NLRP12P59046 1061 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 TNNC1P63316 161 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 MAP3K9P80192 1104 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 PKP1Q13835 747 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 CCDC125Q86Z20 511 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 CCDC24Q8N4L8 307 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 PPFIBP2Q8ND30 876 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 SLC26A6Q9BXS9 759 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 GOPCQ9HD26 462 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 MCM9Q9NXL9 1143 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 LUC7L2Q9Y383 392 aaKnown RBP6.93□□□□□ -1.3
VPS13D-202ENST00000460333 BCL9LQ86UU0 1499 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 ZMYM6O95789 1325 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 TXNRD1Q16881 649 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 RUFY4Q6ZNE9 571 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 CCDC51Q96ER9 411 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 RASAL2Q9UJF2 1139 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 UBR2Q8IWV8 1755 aa6.93□□□□□ -1.3
VPS13D-202ENST00000460333 CETN2P41208 172 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 GUCY1B3Q02153 619 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 RAD51AP2Q09MP3 1159 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 SNCBQ16143 134 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 SH2D4BQ5SQS7 431 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 VGLL2Q8N8G2 317 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 LEO1Q8WVC0 666 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-202ENST00000460333 LZTFL1Q9NQ48 299 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 DOT1LQ8TEK3 1739 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 CCDC151A5D8V7 595 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 SCRN1Q12765 414 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 SOGA3Q5TF21 947 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 ANKRD7Q92527 254 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 BRIP1Q9BX63 1249 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 SUDS3Q9H7L9 328 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-202ENST00000460333 PAPPAQ13219 1627 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 KIF3CO14782 793 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 HLA-DOAP06340 250 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 LIFRP42702 1097 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 MTIF2P46199 727 aaKnown RBP6.92□□□□□ -1.3
VPS13D-202ENST00000460333 EXOSC10Q01780 885 aaKnown RBP6.92□□□□□ -1.3
VPS13D-202ENST00000460333 CTDSPL2Q05D32 466 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 CYP26C1Q6V0L0 522 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 TMTC1Q8IUR5 882 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 RNF168Q8IYW5 571 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-202ENST00000460333 TMEM87AQ8NBN3 555 aa6.92□□□□□ -1.3
VPS13D-202ENST00000460333 LARGE1O95461 756 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 KRT18P05783 430 aaKnown RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 PNMA6AP0CW24 399 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 CCDC96Q2M329 555 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 DPP8Q6V1X1 898 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 CACNA2D3Q8IZS8 1091 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 CNKSR2Q8WXI2 1034 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 FAM84BQ96KN1 310 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 AATFQ9NY61 560 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 GJA3Q9Y6H8 435 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 RIC1Q4ADV7 1423 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 PDS5AQ29RF7 1337 aaKnown RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 PPEF1O14829 653 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 JAK2O60674 1132 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 TSPY3P0CV98 308 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 TSPY8P0CW00 308 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 NPR1P16066 1061 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 SETDB1Q15047 1291 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 TDRD12Q587J7 1177 aaKnown RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 WDR78Q5VTH9 848 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 CDC37L1Q7L3B6 337 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 DAAM2Q86T65 1068 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 IFT20Q8IY31 132 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 CRAMP1Q96RY5 1269 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 CAPS2Q9BXY5 557 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 RNF216Q9NWF9 866 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 GEMIN8Q9NWZ8 242 aaKnown RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 PRDM4Q9UKN5 801 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 SPEF2Q9C093 1822 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 AKR1B10O60218 316 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 DEXIO95424 95 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 PRPHP41219 470 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 MATR3P43243 847 aaKnown RBP eCLIP6.91□□□□□ -1.32e-6■□□□□ 9.3
VPS13D-202ENST00000460333 CLCN6P51797 869 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 RCAN1P53805 252 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 AMPD3Q01432 767 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 SLMAPQ14BN4 828 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 TTC6Q86TZ1 520 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 MB21D2Q8IYB1 491 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 LCORLQ8N3X6 602 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 KRI1Q8N9T8 703 aaKnown RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms