RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	BLID	Q8IZY5	108 aa		19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	CTAGE1	Q96RT6	745 aa		19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	MTR	Q99707	1265 aa		19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	AKR1B15	C9JRZ8	316 aa	Predicted RBP	19.2	■□□□□ 0.66
TOM1-210	ENST00000449058	GRM4	Q14833	912 aa		19.2	■□□□□ 0.66
TOM1-210	ENST00000449058	AMIGO3	Q86WK7	504 aa		19.2	■□□□□ 0.66
TOM1-210	ENST00000449058	PNMA1	Q8ND90	353 aa		19.2	■□□□□ 0.66
TOM1-210	ENST00000449058	WDR66	Q8TBY9	1149 aa		19.2	■□□□□ 0.66
TOM1-210	ENST00000449058	GTPBP6	O43824	516 aa	Predicted RBP	19.2	■□□□□ 0.66
TOM1-210	ENST00000449058	DMTN	Q08495	405 aa		19.2	■□□□□ 0.66
TOM1-210	ENST00000449058	STAM	Q92783	540 aa		19.2	■□□□□ 0.66
TOM1-210	ENST00000449058	ARHGEF1	Q92888	912 aa	Known RBP	19.2	■□□□□ 0.66
TOM1-210	ENST00000449058	FAM53C	Q9NYF3	392 aa		19.2	■□□□□ 0.66
TOM1-210	ENST00000449058	PCDHA4	Q9UN74	947 aa		19.2	■□□□□ 0.66
TOM1-210	ENST00000449058	RTCB	Q9Y3I0	505 aa	Known RBP	19.2	■□□□□ 0.66
TOM1-210	ENST00000449058	FAM205A	Q6ZU69	1335 aa		19.2	■□□□□ 0.66
TOM1-210	ENST00000449058		M0R2N6	131 aa		19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	LDHB	P07195	334 aa	Known RBP	19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	LONP1	P36776	959 aa	Known RBP	19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	UTP14C	Q5TAP6	766 aa	Known RBP	19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	CDK5RAP2	Q96SN8	1893 aa		19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	URI1	O94763	535 aa	Predicted RBP	19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	USP5	P45974	858 aa		19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	STAG2	Q8N3U4	1231 aa		19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	IGSF22	Q8N9C0	903 aa		19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	TCP11L1	Q9NUJ3	509 aa		19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	LEMD3	Q9Y2U8	911 aa		19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	LY75	O60449	1722 aa		19.19	■□□□□ 0.66
TOM1-210	ENST00000449058	CCDC178	Q5BJE1	867 aa		19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	DYNLL2	Q96FJ2	89 aa		19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	BLZF1	Q9H2G9	400 aa		19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	MAD2L2	Q9UI95	211 aa		19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	CTNND2	Q9UQB3	1225 aa		19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	GNAQ	P50148	359 aa		19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	PPP4C	P60510	307 aa		19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	RBL2	Q08999	1139 aa		19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	SLC4A8	Q2Y0W8	1093 aa		19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	WDR24	Q96S15	920 aa		19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	NAA15	Q9BXJ9	866 aa	Known RBP	19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	RWDD2A	Q9UIY3	292 aa		19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	CCNL1	Q9UK58	526 aa	Predicted RBP	19.18	■□□□□ 0.66
TOM1-210	ENST00000449058	LRRC10B	A6NIK2	292 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	NPHP1	O15259	732 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	GSTO1	P78417	241 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	GRAP	Q13588	217 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	SLC35G1	Q2M3R5	365 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	FILIP1L	Q4L180	1135 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	TYW1B	Q6NUM6	668 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	PPFIBP1	Q86W92	1011 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	DAGLB	Q8NCG7	672 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	GRAPL	Q8TC17	118 aa	Predicted RBP	19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	GTPBP4	Q9BZE4	634 aa	Known RBP	19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	ZNF446	Q9NWS9	450 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	LIMA1	Q9UHB6	759 aa	Known RBP	19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	ITIH6	Q6UXX5	1313 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	TADA3	O75528	432 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	GNG11	P61952	73 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	RRAGB	Q5VZM2	374 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	ANKIB1	Q9P2G1	1089 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	PRDM4	Q9UKN5	801 aa		19.17	■□□□□ 0.66
TOM1-210	ENST00000449058	TOM1	O60784	492 aa		19.16	■□□□□ 0.66
TOM1-210	ENST00000449058	FECH	P22830	423 aa		19.16	■□□□□ 0.66
TOM1-210	ENST00000449058	CASQ1	P31415	396 aa		19.16	■□□□□ 0.66
TOM1-210	ENST00000449058	MAP3K9	P80192	1104 aa		19.16	■□□□□ 0.66
TOM1-210	ENST00000449058	MTF1	Q14872	753 aa		19.16	■□□□□ 0.66
TOM1-210	ENST00000449058	ZNF658	Q5TYW1	1059 aa	Predicted RBP	19.16	■□□□□ 0.66
TOM1-210	ENST00000449058	SLC51A	Q86UW1	340 aa		19.16	■□□□□ 0.66
TOM1-210	ENST00000449058	KIFC2	Q96AC6	838 aa		19.16	■□□□□ 0.66
TOM1-210	ENST00000449058	DESI2	Q9BSY9	194 aa		19.16	■□□□□ 0.66
TOM1-210	ENST00000449058	RMND1	Q9NWS8	449 aa		19.16	■□□□□ 0.66
TOM1-210	ENST00000449058	USP17L3	A6NCW0	530 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	USP17L4	A6NCW7	530 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	EFCAB8	A8MWE9	144 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	MFAP3L	O75121	409 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	BAG3	O95817	575 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	GRIK5	Q16478	980 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	ARHGAP29	Q52LW3	1261 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	GALNT17	Q6IS24	598 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	C15orf52	Q6ZUT6	534 aa	Known RBP	19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	USP17L1	Q7RTZ2	530 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	FAM177A1	Q8N128	213 aa	Predicted RBP	19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	MKNK2	Q9HBH9	465 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	THSD7A	Q9UPZ6	1657 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	DDX60L	Q5H9U9	1706 aa	Known RBP	19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	SOWAHD	A6NJG2	315 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	RPN1	P04843	607 aa	Known RBP	19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	CCDC175	P0C221	793 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	DIXDC1	Q155Q3	683 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	RAD9B	Q6WBX8	426 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	MNS1	Q8NEH6	495 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	UBXN4	Q92575	508 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	CARD6	Q9BX69	1037 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	MRPL44	Q9H9J2	332 aa	Known RBP	19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	PCDHA6	Q9UN73	950 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	PCDHA8	Q9Y5H6	950 aa		19.15	■□□□□ 0.66
TOM1-210	ENST00000449058	CYTH3	O43739	400 aa		19.14	■□□□□ 0.66
TOM1-210	ENST00000449058	TXLNA	P40222	546 aa		19.14	■□□□□ 0.66
TOM1-210	ENST00000449058	PAK1	Q13153	545 aa		19.14	■□□□□ 0.66

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms