RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 DHX58Q96C10 678 aa12.17□□□□□ -0.46
CUX1-205ENST00000425244 MCM9Q9NXL9 1143 aa12.17□□□□□ -0.46
CUX1-205ENST00000425244 CEP131Q9UPN4 1083 aa12.17□□□□□ -0.46
CUX1-205ENST00000425244 NID2Q14112 1375 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 TRIM75PA6NK02 468 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 NMT2O60551 498 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 RAD17O75943 681 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 BAG3O95817 575 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 CYP2D6P10635 497 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 GSTO1P78417 241 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 DALRD3Q5D0E6 543 aaKnown RBP12.16□□□□□ -0.46
CUX1-205ENST00000425244 EARS2Q5JPH6 523 aaKnown RBP12.16□□□□□ -0.46
CUX1-205ENST00000425244 SAMD1Q6SPF0 538 aaPredicted RBP12.16□□□□□ -0.46
CUX1-205ENST00000425244 SYT10Q6XYQ8 523 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 MAPKAPK5Q8IW41 473 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 NLGN2Q8NFZ4 835 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 SHISA4Q96DD7 197 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 RNF26Q9BY78 433 aaPredicted RBP12.16□□□□□ -0.46
CUX1-205ENST00000425244 TIAM2Q8IVF5 1701 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 USP17L8P0C7I0 530 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 KRT2P35908 639 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 AFMP43652 599 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 MDM2Q00987 491 aaPredicted RBP12.16□□□□□ -0.46
CUX1-205ENST00000425244 FMR1Q06787 632 aaKnown RBP eCLIP12.16□□□□□ -0.464e-6■■■■□ 21.6
CUX1-205ENST00000425244 PICALMQ13492 652 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 PODNQ7Z5L7 613 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 DCP1AQ9NPI6 582 aaPredicted RBP12.16□□□□□ -0.46
CUX1-205ENST00000425244 NFE2L3Q9Y4A8 694 aa12.16□□□□□ -0.46
CUX1-205ENST00000425244 SRPRBQ9Y5M8 271 aaKnown RBP12.16□□□□□ -0.46
CUX1-205ENST00000425244 LDHCP07864 332 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 TGFB2P61812 414 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 FAM47AQ5JRC9 791 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 ILDR2Q71H61 639 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 MTA3Q9BTC8 594 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 ANAPC4Q9UJX5 808 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 PCDHAC2Q9Y5I4 1007 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 BAZ2BQ9UIF8 2168 aaKnown RBP12.15□□□□□ -0.46
CUX1-205ENST00000425244 PTGER2P43116 358 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 DMTNQ08495 405 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 ZNF174Q15697 407 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 PKN1Q16512 942 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 NOM1Q5C9Z4 860 aaKnown RBP12.15□□□□□ -0.46
CUX1-205ENST00000425244 KLHL10Q6JEL2 608 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 CTR9Q6PD62 1173 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 VSTM4Q8IW00 320 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 RTKN2Q8IZC4 609 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 EPSTI1Q96J88 318 aa12.15□□□□□ -0.46
CUX1-205ENST00000425244 RTFDC1Q9BY42 306 aaPredicted RBP12.15□□□□□ -0.46
CUX1-205ENST00000425244 FAM205AQ6ZU69 1335 aa12.15□□□□□ -0.47
CUX1-205ENST00000425244 KIF2AO00139 706 aaPredicted RBP12.14□□□□□ -0.47
CUX1-205ENST00000425244 CASP1P29466 404 aa12.14□□□□□ -0.47
CUX1-205ENST00000425244 RCAN1P53805 252 aa12.14□□□□□ -0.47
CUX1-205ENST00000425244 TEX11Q8IYF3 940 aa12.14□□□□□ -0.47
CUX1-205ENST00000425244 YDJCA8MPS7 323 aa12.14□□□□□ -0.47
CUX1-205ENST00000425244 ACTN4O43707 911 aaKnown RBP12.14□□□□□ -0.47
CUX1-205ENST00000425244 CC2D2BQ6DHV5 1058 aa12.14□□□□□ -0.47
CUX1-205ENST00000425244 BRMS1Q9HCU9 246 aa12.14□□□□□ -0.47
CUX1-205ENST00000425244 INTS13Q9NVM9 706 aa12.14□□□□□ -0.47
CUX1-205ENST00000425244 DAGLAQ9Y4D2 1042 aa12.14□□□□□ -0.47
CUX1-205ENST00000425244 SCN9AQ15858 1988 aa12.14□□□□□ -0.47
CUX1-205ENST00000425244 USP17L3A6NCW0 530 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 USP17L4A6NCW7 530 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 WNT7AO00755 349 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 DHX8Q14562 1220 aaKnown RBP12.13□□□□□ -0.47
CUX1-205ENST00000425244 ELF2Q15723 593 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 USP17L1Q7RTZ2 530 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 ZNF579Q8NAF0 562 aaKnown RBP12.13□□□□□ -0.47
CUX1-205ENST00000425244 SUPT20HQ8NEM7 779 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 SGIP1Q9BQI5 828 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 DACH1Q9UI36 760 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 PRPF3O43395 683 aaKnown RBP12.13□□□□□ -0.47
CUX1-205ENST00000425244 CACNB3P54284 484 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 TROAPQ12815 778 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 MORC3Q14149 939 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 SYCP1Q15431 976 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 FAM177A1Q8N128 213 aaPredicted RBP12.13□□□□□ -0.47
CUX1-205ENST00000425244 MLKLQ8NB16 471 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 CTCFLQ8NI51 663 aaPredicted RBP12.13□□□□□ -0.47
CUX1-205ENST00000425244 SYMPKQ92797 1274 aaKnown RBP12.13□□□□□ -0.47
CUX1-205ENST00000425244 PHF20Q9BVI0 1012 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 KCND1Q9NSA2 647 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 SAMSN1Q9NSI8 373 aaKnown RBP12.13□□□□□ -0.47
CUX1-205ENST00000425244 CGNQ9P2M7 1197 aaKnown RBP12.13□□□□□ -0.47
CUX1-205ENST00000425244 DNAI1Q9UI46 699 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 ZBTB12Q9Y330 459 aaPredicted RBP12.13□□□□□ -0.47
CUX1-205ENST00000425244 A0A087X0B3 334 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 VWA3AA6NCI4 1184 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 SLU7O95391 586 aaKnown RBP12.13□□□□□ -0.47
CUX1-205ENST00000425244 STX17P56962 302 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 FUT2Q10981 343 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 PPP2R5BQ15173 497 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 DYNLL2Q96FJ2 89 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 ATP8A2Q9NTI2 1148 aa12.13□□□□□ -0.47
CUX1-205ENST00000425244 RBM28Q9NW13 759 aaKnown RBP12.13□□□□□ -0.47
CUX1-205ENST00000425244 DACT2Q5SW24 774 aa12.12□□□□□ -0.47
CUX1-205ENST00000425244 KANK3Q6NY19 840 aa12.12□□□□□ -0.47
CUX1-205ENST00000425244 TMTC3Q6ZXV5 915 aa12.12□□□□□ -0.47
CUX1-205ENST00000425244 SLF2Q8IX21 1173 aa12.12□□□□□ -0.47
CUX1-205ENST00000425244 STAMQ92783 540 aa12.12□□□□□ -0.47
CUX1-205ENST00000425244 ERO1AQ96HE7 468 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms