RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 PATL2C9JE40 543 aaKnown RBP10.97□□□□□ -0.65
VPS53-203ENST00000401468 C3orf80F5H4A9 247 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 RGS20O76081 388 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 FMNL1O95466 1100 aaPredicted RBP10.97□□□□□ -0.65
VPS53-203ENST00000401468 HSPD1P10809 573 aaKnown RBP10.97□□□□□ -0.65
VPS53-203ENST00000401468 HMGCS2P54868 508 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 MAP3K10Q02779 954 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 SPP2Q13103 211 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 MTFR1Q15390 333 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 C8orf34Q49A92 452 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 C17orf99Q6UX52 265 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 ANKRD23Q86SG2 305 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 METTL16Q86W50 562 aaKnown RBP10.97□□□□□ -0.65
VPS53-203ENST00000401468 DSCC1Q9BVC3 393 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 CRNKL1Q9BZJ0 848 aaKnown RBP10.97□□□□□ -0.65
VPS53-203ENST00000401468 DNAJC18Q9H819 358 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 EPB41L4AQ9HCS5 686 aaPredicted RBP10.97□□□□□ -0.65
VPS53-203ENST00000401468 DCP1AQ9NPI6 582 aaPredicted RBP10.97□□□□□ -0.65
VPS53-203ENST00000401468 RBM27Q9P2N5 1060 aaKnown RBP10.97□□□□□ -0.65
VPS53-203ENST00000401468 ROBO3Q96MS0 1386 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 PLXNA1Q9UIW2 1896 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 RLFQ13129 1914 aa10.97□□□□□ -0.65
VPS53-203ENST00000401468 A0A0G2JLL6 359 aaPredicted RBP10.96□□□□□ -0.65
VPS53-203ENST00000401468 KCNC4Q03721 635 aa10.96□□□□□ -0.65
VPS53-203ENST00000401468 ZYXQ15942 572 aaKnown RBP10.96□□□□□ -0.65
VPS53-203ENST00000401468 SBK1Q52WX2 424 aa10.96□□□□□ -0.65
VPS53-203ENST00000401468 CASC1Q6TDU7 716 aa10.96□□□□□ -0.65
VPS53-203ENST00000401468 CCDC129Q6ZRS4 1044 aa10.96□□□□□ -0.65
VPS53-203ENST00000401468 NUDT18Q6ZVK8 323 aa10.96□□□□□ -0.65
VPS53-203ENST00000401468 PRRT2Q7Z6L0 340 aaPredicted RBP10.96□□□□□ -0.65
VPS53-203ENST00000401468 ANKRD13CQ8N6S4 541 aa10.96□□□□□ -0.65
VPS53-203ENST00000401468 MCM3APO60318 1980 aa10.96□□□□□ -0.66
VPS53-203ENST00000401468 SMIM22K7EJ46 135 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 PRKAB2O43741 272 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 CTNND1O60716 968 aaKnown RBP10.95□□□□□ -0.66
VPS53-203ENST00000401468 ELNP15502 786 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 PRKCZQ05513 592 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 KIF22Q14807 665 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 VPS53Q5VIR6 699 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 IFNL3Q8IZI9 196 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 CRACR2BQ8N4Y2 399 aaPredicted RBP10.95□□□□□ -0.66
VPS53-203ENST00000401468 SLC17A8Q8NDX2 589 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 SDR42E1Q8WUS8 393 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 MAP4K1Q92918 833 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 ZNF333Q96JL9 665 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 LSG1Q9H089 658 aaKnown RBP10.95□□□□□ -0.66
VPS53-203ENST00000401468 EHD4Q9H223 541 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 DHX36Q9H2U1 1008 aaKnown RBP10.95□□□□□ -0.66
VPS53-203ENST00000401468 SLC4A4Q9Y6R1 1079 aa10.95□□□□□ -0.66
VPS53-203ENST00000401468 SMCHD1A6NHR9 2005 aa10.94□□□□□ -0.66
VPS53-203ENST00000401468 DNAH12Q6ZR08 3092 aa10.94□□□□□ -0.66
VPS53-203ENST00000401468 MYPNQ86TC9 1320 aa10.94□□□□□ -0.66
VPS53-203ENST00000401468 RNF40O75150 1001 aa10.94□□□□□ -0.66
VPS53-203ENST00000401468 CYP2D6P10635 497 aa10.94□□□□□ -0.66
VPS53-203ENST00000401468 MLLT3P42568 568 aaPredicted RBP10.94□□□□□ -0.66
VPS53-203ENST00000401468 USP5P45974 858 aa10.94□□□□□ -0.66
VPS53-203ENST00000401468 GABPAQ06546 454 aa10.94□□□□□ -0.66
VPS53-203ENST00000401468 MTMR2Q13614 643 aa10.94□□□□□ -0.66
VPS53-203ENST00000401468 PADI6Q6TGC4 694 aa10.94□□□□□ -0.66
VPS53-203ENST00000401468 SMCR8Q8TEV9 937 aaPredicted RBP10.94□□□□□ -0.66
VPS53-203ENST00000401468 ARMC5Q96C12 935 aa10.94□□□□□ -0.66
VPS53-203ENST00000401468 PARK7Q99497 189 aaKnown RBP10.94□□□□□ -0.66
VPS53-203ENST00000401468 BIN2Q9UBW5 565 aaPredicted RBP10.94□□□□□ -0.66
VPS53-203ENST00000401468 ANAPC4Q9UJX5 808 aa10.94□□□□□ -0.66
VPS53-203ENST00000401468 CXCL11O14625 94 aa10.93□□□□□ -0.66
VPS53-203ENST00000401468 FGAP02671 866 aa10.93□□□□□ -0.66
VPS53-203ENST00000401468 FGRP09769 529 aa10.93□□□□□ -0.66
VPS53-203ENST00000401468 BCRP11274 1271 aa10.93□□□□□ -0.66
VPS53-203ENST00000401468 CAP2P40123 477 aa10.93□□□□□ -0.66
VPS53-203ENST00000401468 PTH1RQ03431 593 aa10.93□□□□□ -0.66
VPS53-203ENST00000401468 C12orf60Q5U649 245 aa10.93□□□□□ -0.66
VPS53-203ENST00000401468 CTR9Q6PD62 1173 aa10.93□□□□□ -0.66
VPS53-203ENST00000401468 RAET1EQ8TD07 263 aa10.93□□□□□ -0.66
VPS53-203ENST00000401468 TRIM34Q9BYJ4 488 aa10.93□□□□□ -0.66
VPS53-203ENST00000401468 ARPP21Q9UBL0 812 aaPredicted RBP10.93□□□□□ -0.66
VPS53-203ENST00000401468 EIF5BO60841 1220 aaKnown RBP10.92□□□□□ -0.66
VPS53-203ENST00000401468 CLEC10AQ8IUN9 316 aa10.92□□□□□ -0.66
VPS53-203ENST00000401468 STK11IPQ8N1F8 1099 aa10.92□□□□□ -0.66
VPS53-203ENST00000401468 ZNF280CQ8ND82 737 aa10.92□□□□□ -0.66
VPS53-203ENST00000401468 KCNB2Q92953 911 aa10.92□□□□□ -0.66
VPS53-203ENST00000401468 IL17RAQ96F46 866 aa10.92□□□□□ -0.66
VPS53-203ENST00000401468 NACAP1Q9BZK3 213 aa10.92□□□□□ -0.66
VPS53-203ENST00000401468 NPDC1Q9NQX5 325 aaPredicted RBP10.92□□□□□ -0.66
VPS53-203ENST00000401468 PI4KBQ9UBF8 816 aa10.92□□□□□ -0.66
VPS53-203ENST00000401468 SRRDQ9UH36 339 aa10.92□□□□□ -0.66
VPS53-203ENST00000401468 AGTPBP1Q9UPW5 1226 aa10.92□□□□□ -0.66
VPS53-203ENST00000401468 TRIOBPQ9H2D6 2365 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 CYP2D7A0A087X1C5 515 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 USP17L5A8MUK1 530 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 USP17L12C9JPN9 530 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 USP17L21D6R901 530 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 REC8O95072 547 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 GH2P01242 217 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 PLCD1P51178 756 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 TRIM32Q13049 653 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 NECTIN1Q15223 517 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 FASTKD5Q7L8L6 764 aaKnown RBP10.91□□□□□ -0.66
VPS53-203ENST00000401468 TTC6Q86TZ1 520 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 SLC44A5Q8NCS7 719 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 SHISA4Q96DD7 197 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms