RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 ASIC2Q16515 512 aa18.5■□□□□ 0.55
SCN3B-202ENST00000392770 PCDHA4Q9UN74 947 aa18.5■□□□□ 0.55
SCN3B-202ENST00000392770 NPR1P16066 1061 aa18.5■□□□□ 0.55
SCN3B-202ENST00000392770 C17orf53Q8N3J3 647 aaPredicted RBP18.5■□□□□ 0.55
SCN3B-202ENST00000392770 GAS7O60861 476 aa18.5■□□□□ 0.55
SCN3B-202ENST00000392770 CYP2E1P05181 493 aaPredicted RBP18.5■□□□□ 0.55
SCN3B-202ENST00000392770 POLR2MP0CAP2 368 aa18.5■□□□□ 0.55
SCN3B-202ENST00000392770 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.5■□□□□ 0.55
SCN3B-202ENST00000392770 NEURL4Q96JN8 1562 aa18.5■□□□□ 0.55
SCN3B-202ENST00000392770 GOLGA6L7A0A1B0GV03 622 aa18.49■□□□□ 0.55
SCN3B-202ENST00000392770 PTGDRQ13258 359 aa18.49■□□□□ 0.55
SCN3B-202ENST00000392770 XPO4Q9C0E2 1151 aaKnown RBP18.49■□□□□ 0.55
SCN3B-202ENST00000392770 TTLL1O95922 423 aa18.49■□□□□ 0.55
SCN3B-202ENST00000392770 BIRC3Q13489 604 aa18.49■□□□□ 0.55
SCN3B-202ENST00000392770 VWA3BQ502W6 1294 aa18.49■□□□□ 0.55
SCN3B-202ENST00000392770 ARFGAP3Q9NP61 516 aa18.49■□□□□ 0.55
SCN3B-202ENST00000392770 CPDO75976 1380 aa18.49■□□□□ 0.55
SCN3B-202ENST00000392770 NOP56O00567 594 aaKnown RBP18.49■□□□□ 0.55
SCN3B-202ENST00000392770 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.49■□□□□ 0.55
SCN3B-202ENST00000392770 WDR44Q5JSH3 913 aa18.49■□□□□ 0.55
SCN3B-202ENST00000392770 FMNL3Q8IVF7 1028 aa18.49■□□□□ 0.55
SCN3B-202ENST00000392770 KCNQ2O43526 872 aa18.49■□□□□ 0.55
SCN3B-202ENST00000392770 PPP6R2O75170 966 aa18.49■□□□□ 0.55
SCN3B-202ENST00000392770 MAP2K1Q02750 393 aaPredicted RBP18.49■□□□□ 0.55
SCN3B-202ENST00000392770 MCTP2Q6DN12 878 aa18.49■□□□□ 0.55
SCN3B-202ENST00000392770 MRPL11Q9Y3B7 192 aaKnown RBP18.49■□□□□ 0.55
SCN3B-202ENST00000392770 ASPRV1Q53RT3 343 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 GPBP1Q86WP2 473 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 CCDC50Q8IVM0 306 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 SLFN12Q8IYM2 578 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 CSRNP2Q9H175 543 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 MINPP1Q9UNW1 487 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 CSRNP1Q96S65 589 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 STRBPQ96SI9 672 aaKnown RBP18.48■□□□□ 0.55
SCN3B-202ENST00000392770 DNAJC5Q9H3Z4 198 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 TECPR2O15040 1411 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 ALAS1P13196 640 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 KIF23Q02241 960 aaPredicted RBP18.48■□□□□ 0.55
SCN3B-202ENST00000392770 ARHGEF16Q5VV41 709 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 KCTD1Q719H9 257 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 MIER3Q7Z3K6 550 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 PXDNLA1KZ92 1463 aa18.48■□□□□ 0.55
SCN3B-202ENST00000392770 LONP1P36776 959 aaKnown RBP18.47■□□□□ 0.55
SCN3B-202ENST00000392770 IRX3P78415 501 aaPredicted RBP18.47■□□□□ 0.55
SCN3B-202ENST00000392770 SLC39A14Q15043 492 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 ARHGAP27Q6ZUM4 889 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 PCDHA12Q9UN75 941 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 MMP1P03956 469 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 EAPPQ56P03 285 aaPredicted RBP18.47■□□□□ 0.55
SCN3B-202ENST00000392770 CCDC91Q7Z6B0 441 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 POLR3EQ9NVU0 708 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 ARHGEF28Q8N1W1 1705 aaKnown RBP18.47■□□□□ 0.55
SCN3B-202ENST00000392770 A0A1W2PQ27 194 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 A0A1W2PQ64 194 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 A0A1W2PQD8 194 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 MORC3Q14149 939 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 JAKMIP2Q96AA8 810 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 CCDC17Q96LX7 622 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 ZNF827Q17R98 1081 aa18.47■□□□□ 0.55
SCN3B-202ENST00000392770 RHOXF2BP0C7M4 288 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 ACTN2P35609 894 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 DCAF15Q66K64 600 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 RASGRP4Q8TDF6 673 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 RHOXF2Q9BQY4 288 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 FTOQ9C0B1 505 aaKnown RBP eCLIP18.46■□□□□ 0.55
SCN3B-202ENST00000392770 SNAP23O00161 211 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 SMC1AQ14683 1233 aaKnown RBP18.46■□□□□ 0.55
SCN3B-202ENST00000392770 NEDD4P46934 1319 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 TNFAIP3P21580 790 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 TOB2Q14106 344 aaPredicted RBP18.46■□□□□ 0.55
SCN3B-202ENST00000392770 ARHGEF1Q92888 912 aaKnown RBP18.46■□□□□ 0.55
SCN3B-202ENST00000392770 CSADQ9Y600 493 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 GDF11O95390 407 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 KCNJ18B7U540 433 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 KCNJ12Q14500 433 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 TICAM2Q86XR7 235 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 TBC1D10CQ8IV04 446 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 KIFAP3Q92845 792 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 FERMT1Q9BQL6 677 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 PCDHA1Q9Y5I3 950 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 IVNS1ABPQ9Y6Y0 642 aa18.46■□□□□ 0.55
SCN3B-202ENST00000392770 RFX7Q2KHR2 1363 aa18.46■□□□□ 0.54
SCN3B-202ENST00000392770 RPAP1Q9BWH6 1393 aaPredicted RBP18.46■□□□□ 0.54
SCN3B-202ENST00000392770 GTPBP6O43824 516 aaPredicted RBP18.45■□□□□ 0.54
SCN3B-202ENST00000392770 NLRX1Q86UT6 975 aa18.45■□□□□ 0.54
SCN3B-202ENST00000392770 SH3RF3Q8TEJ3 882 aaPredicted RBP18.45■□□□□ 0.54
SCN3B-202ENST00000392770 AZI2Q9H6S1 392 aa18.45■□□□□ 0.54
SCN3B-202ENST00000392770 TESPA1A2RU30 521 aaPredicted RBP18.45■□□□□ 0.54
SCN3B-202ENST00000392770 MASTLQ96GX5 879 aa18.45■□□□□ 0.54
SCN3B-202ENST00000392770 RPN1P04843 607 aaKnown RBP18.45■□□□□ 0.54
SCN3B-202ENST00000392770 LMAN1P49257 510 aa18.45■□□□□ 0.54
SCN3B-202ENST00000392770 PPP2R3AQ06190 1150 aa18.45■□□□□ 0.54
SCN3B-202ENST00000392770 GPIHBP1Q8IV16 184 aa18.45■□□□□ 0.54
SCN3B-202ENST00000392770 CELF1Q92879 486 aaKnown RBP18.45■□□□□ 0.54
SCN3B-202ENST00000392770 PPP1R9BQ96SB3 815 aa18.45■□□□□ 0.54
SCN3B-202ENST00000392770 RRAGDQ9NQL2 400 aaPredicted RBP18.45■□□□□ 0.54
SCN3B-202ENST00000392770 CEP83Q9Y592 693 aa18.45■□□□□ 0.54
SCN3B-202ENST00000392770 MMP10P09238 476 aa18.45■□□□□ 0.54
SCN3B-202ENST00000392770 EZRP15311 586 aaKnown RBP18.45■□□□□ 0.54
SCN3B-202ENST00000392770 LONRF3Q496Y0 759 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms