RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 PTPN21Q16825 1174 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 TUBB2BQ9BVA1 445 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 VAV2P52735 878 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 ETF1P62495 437 aaKnown RBP16.7■□□□□ 0.26
NPHP4-201ENST00000378156 BIRC3Q13489 604 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 CEP57Q86XR8 500 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 TTLL11Q8NHH1 800 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 AIFM3Q96NN9 605 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 BCS1LQ9Y276 419 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 CEP83Q9Y592 693 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 ABCA9Q8IUA7 1624 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 DDAH1O94760 285 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 EEF2P13639 858 aaKnown RBP16.7■□□□□ 0.26
NPHP4-201ENST00000378156 CERKLQ49MI3 558 aaPredicted RBP16.7■□□□□ 0.26
NPHP4-201ENST00000378156 KIFC2Q96AC6 838 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 C10orf67Q8IYJ2 551 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 IFT74Q96LB3 600 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 NCAPD2Q15021 1401 aa16.7■□□□□ 0.26
NPHP4-201ENST00000378156 GBP6Q6ZN66 633 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 TMC4Q7Z404 712 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 FAM76AQ8TAV0 307 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 CCDC114Q96M63 670 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 ZNF408Q9H9D4 720 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 DDX39AO00148 427 aaKnown RBP16.69■□□□□ 0.26
NPHP4-201ENST00000378156 GOLGA8HP0CJ92 632 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 VWA3BQ502W6 1294 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 HARSP12081 509 aaKnown RBP16.69■□□□□ 0.26
NPHP4-201ENST00000378156 DNAJC21Q5F1R6 531 aaKnown RBP16.69■□□□□ 0.26
NPHP4-201ENST00000378156 DPH6Q7L8W6 267 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 LRRC47Q8N1G4 583 aaKnown RBP16.69■□□□□ 0.26
NPHP4-201ENST00000378156 IFT81Q8WYA0 676 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 GJB4Q9NTQ9 266 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 IVNS1ABPQ9Y6Y0 642 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 TMEM110-MUSTN1A8MSY1 372 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 CALUO43852 315 aaPredicted RBP16.69■□□□□ 0.26
NPHP4-201ENST00000378156 GJC1P36383 396 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 NT5C3AQ9H0P0 336 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 PSTPIP2Q9H939 334 aa16.69■□□□□ 0.26
NPHP4-201ENST00000378156 RAD51AP2Q09MP3 1159 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 ATP10DQ9P241 1426 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 PRKAB2O43741 272 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 INF2Q27J81 1249 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 SUSD4Q5VX71 490 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 JAKMIP2Q96AA8 810 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 RSRC1Q96IZ7 334 aaKnown RBP16.68■□□□□ 0.26
NPHP4-201ENST00000378156 PPP2R2CQ9Y2T4 447 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 GOLGA8FQ08AF8 430 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 GOLGA8DPQ0D2H9 430 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 KRT27Q7Z3Y8 459 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.68■□□□□ 0.26
NPHP4-201ENST00000378156 B4GALNT4Q76KP1 1039 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 MAEAQ7L5Y9 396 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 NUP58Q9BVL2 599 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 PALLDQ8WX93 1383 aa16.68■□□□□ 0.26
NPHP4-201ENST00000378156 A0A1B0GUA9 196 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 PPEF1O14829 653 aaPredicted RBP16.67■□□□□ 0.26
NPHP4-201ENST00000378156 PLCB3Q01970 1234 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 ICA1Q05084 483 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 WDR44Q5JSH3 913 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 GALNT17Q6IS24 598 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 CPLX4Q7Z7G2 160 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 PGBD1Q96JS3 809 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 EXOC7Q9UPT5 735 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 FRMPD2Q68DX3 1309 aaPredicted RBP16.67■□□□□ 0.26
NPHP4-201ENST00000378156 NOP56O00567 594 aaKnown RBP16.67■□□□□ 0.26
NPHP4-201ENST00000378156 CLEC4GQ6UXB4 293 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 MSANTD4Q8NCY6 345 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 PPP1R14CQ8TAE6 165 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 FNBP4Q8N3X1 1017 aaPredicted RBP16.67■□□□□ 0.26
NPHP4-201ENST00000378156 MYCT1Q8N699 235 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 PDLIM2Q96JY6 352 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 TSGA10Q9BZW7 698 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 TBC1D7Q9P0N9 293 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 TCP10L2B9ZVM9 353 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 CDC25BP30305 580 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 DYNLL1P63167 89 aaKnown RBP16.67■□□□□ 0.26
NPHP4-201ENST00000378156 MCTP2Q6DN12 878 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 ATP6V0A2Q9Y487 856 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 IQGAP1P46940 1657 aa16.67■□□□□ 0.26
NPHP4-201ENST00000378156 GPKOWQ92917 476 aaPredicted RBP eCLIP16.66■□□□□ 0.26
NPHP4-201ENST00000378156 CCDC17Q96LX7 622 aa16.66■□□□□ 0.26
NPHP4-201ENST00000378156 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.66■□□□□ 0.26
NPHP4-201ENST00000378156 PPP6R2O75170 966 aa16.66■□□□□ 0.26
NPHP4-201ENST00000378156 PTGDRQ13258 359 aa16.66■□□□□ 0.26
NPHP4-201ENST00000378156 NEK8Q86SG6 692 aa16.66■□□□□ 0.26
NPHP4-201ENST00000378156 SETD1BQ9UPS6 1966 aaKnown RBP16.66■□□□□ 0.26
NPHP4-201ENST00000378156 NR5A1Q13285 461 aa16.66■□□□□ 0.26
NPHP4-201ENST00000378156 HLFQ16534 295 aa16.66■□□□□ 0.26
NPHP4-201ENST00000378156 CCDC84Q86UT8 332 aaPredicted RBP16.66■□□□□ 0.26
NPHP4-201ENST00000378156 NELFCDQ8IXH7 590 aa16.66■□□□□ 0.26
NPHP4-201ENST00000378156 SREK1Q8WXA9 508 aaKnown RBP16.66■□□□□ 0.26
NPHP4-201ENST00000378156 SYMPKQ92797 1274 aaKnown RBP16.66■□□□□ 0.26
NPHP4-201ENST00000378156 CSRNP2Q9H175 543 aa16.66■□□□□ 0.26
NPHP4-201ENST00000378156 SRP68Q9UHB9 627 aaKnown RBP16.66■□□□□ 0.26
NPHP4-201ENST00000378156 PCDHA12Q9UN75 941 aa16.66■□□□□ 0.26
NPHP4-201ENST00000378156 MYO3AQ8NEV4 1616 aa16.66■□□□□ 0.26
NPHP4-201ENST00000378156 USP31Q70CQ4 1352 aa16.66■□□□□ 0.26
NPHP4-201ENST00000378156 IQCGQ9H095 443 aaKnown RBP16.66■□□□□ 0.26
NPHP4-201ENST00000378156 CDC42BPGQ6DT37 1551 aa16.65■□□□□ 0.26
NPHP4-201ENST00000378156 SH2B2O14492 632 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms