RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SAMD1Q6SPF0 538 aaPredicted RBP25.85■■□□□ 1.73
CCDC28B-201ENST00000373602 NPLOC4Q8TAT6 608 aa25.85■■□□□ 1.73
CCDC28B-201ENST00000373602 PAWRQ96IZ0 340 aaKnown RBP25.85■■□□□ 1.73
CCDC28B-201ENST00000373602 MROH8Q9H579 483 aa25.85■■□□□ 1.73
CCDC28B-201ENST00000373602 HELLSQ9NRZ9 838 aa25.85■■□□□ 1.73
CCDC28B-201ENST00000373602 OGDHLQ9ULD0 1010 aa25.85■■□□□ 1.73
CCDC28B-201ENST00000373602 PPP1R9AQ9ULJ8 1098 aa25.85■■□□□ 1.73
CCDC28B-201ENST00000373602 F5H6K3 240 aa25.84■■□□□ 1.73
CCDC28B-201ENST00000373602 RAD21O60216 631 aa25.84■■□□□ 1.73
CCDC28B-201ENST00000373602 KLRC3Q07444 240 aa25.84■■□□□ 1.73
CCDC28B-201ENST00000373602 TMEM132BQ14DG7 1078 aa25.84■■□□□ 1.73
CCDC28B-201ENST00000373602 MFSD14CQ5VZR4 134 aa25.84■■□□□ 1.73
CCDC28B-201ENST00000373602 MKL1Q969V6 931 aa25.84■■□□□ 1.73
CCDC28B-201ENST00000373602 MTMR4Q9NYA4 1195 aa25.84■■□□□ 1.73
CCDC28B-201ENST00000373602 CLIP2Q9UDT6 1046 aa25.84■■□□□ 1.73
CCDC28B-201ENST00000373602 ZNF236Q9UL36 1845 aa25.84■■□□□ 1.73
CCDC28B-201ENST00000373602 PLIN4Q96Q06 1357 aa25.83■■□□□ 1.73
CCDC28B-201ENST00000373602 NDUFB10O96000 172 aa25.83■■□□□ 1.73
CCDC28B-201ENST00000373602 IGHA2P01877 340 aa25.83■■□□□ 1.73
CCDC28B-201ENST00000373602 ADORA2AP29274 412 aa25.83■■□□□ 1.73
CCDC28B-201ENST00000373602 CCND3P30281 292 aaPredicted RBP25.83■■□□□ 1.73
CCDC28B-201ENST00000373602 NECAB2Q7Z6G3 386 aa25.83■■□□□ 1.73
CCDC28B-201ENST00000373602 CHD1LQ86WJ1 897 aa25.83■■□□□ 1.73
CCDC28B-201ENST00000373602 NEDD1Q8NHV4 660 aa25.83■■□□□ 1.73
CCDC28B-201ENST00000373602 DIS3LQ8TF46 1054 aaKnown RBP25.83■■□□□ 1.73
CCDC28B-201ENST00000373602 CEP95Q96GE4 821 aa25.83■■□□□ 1.73
CCDC28B-201ENST00000373602 VWA5AO00534 786 aa25.82■■□□□ 1.72
CCDC28B-201ENST00000373602 SLC25A27O95847 323 aa25.82■■□□□ 1.72
CCDC28B-201ENST00000373602 MNX1P50219 401 aaPredicted RBP25.82■■□□□ 1.72
CCDC28B-201ENST00000373602 NUCB1Q02818 461 aa25.82■■□□□ 1.72
CCDC28B-201ENST00000373602 DPP9Q86TI2 863 aa25.82■■□□□ 1.72
CCDC28B-201ENST00000373602 NCAPG2Q86XI2 1143 aa25.82■■□□□ 1.72
CCDC28B-201ENST00000373602 ABRAQ8N0Z2 381 aa25.82■■□□□ 1.72
CCDC28B-201ENST00000373602 NUP88Q99567 741 aaPredicted RBP25.82■■□□□ 1.72
CCDC28B-201ENST00000373602 SYNPO2Q9UMS6 1093 aa25.82■■□□□ 1.72
CCDC28B-201ENST00000373602 TTLL1O95922 423 aa25.81■■□□□ 1.72
CCDC28B-201ENST00000373602 TSPY3P0CV98 308 aa25.81■■□□□ 1.72
CCDC28B-201ENST00000373602 TSPY8P0CW00 308 aa25.81■■□□□ 1.72
CCDC28B-201ENST00000373602 VPS53Q5VIR6 699 aa25.81■■□□□ 1.72
CCDC28B-201ENST00000373602 LHX8Q68G74 356 aa25.81■■□□□ 1.72
CCDC28B-201ENST00000373602 RIOX2Q8IUF8 465 aa25.81■■□□□ 1.72
CCDC28B-201ENST00000373602 REPS2Q8NFH8 660 aa25.81■■□□□ 1.72
CCDC28B-201ENST00000373602 FAM227BQ96M60 508 aa25.81■■□□□ 1.72
CCDC28B-201ENST00000373602 SUPT16HQ9Y5B9 1047 aaKnown RBP25.81■■□□□ 1.72
CCDC28B-201ENST00000373602 A0A0D9SFI3 127 aa25.8■■□□□ 1.72
CCDC28B-201ENST00000373602 COBLO75128 1261 aa25.8■■□□□ 1.72
CCDC28B-201ENST00000373602 TFAP4Q01664 338 aa25.8■■□□□ 1.72
CCDC28B-201ENST00000373602 ALX1Q15699 326 aa25.8■■□□□ 1.72
CCDC28B-201ENST00000373602 MCMDC2Q4G0Z9 681 aa25.8■■□□□ 1.72
CCDC28B-201ENST00000373602 FAM47AQ5JRC9 791 aa25.8■■□□□ 1.72
CCDC28B-201ENST00000373602 HABP4Q5JVS0 413 aaKnown RBP25.8■■□□□ 1.72
CCDC28B-201ENST00000373602 PLEKHM2Q8IWE5 1019 aa25.8■■□□□ 1.72
CCDC28B-201ENST00000373602 SLF1Q9BQI6 1058 aa25.8■■□□□ 1.72
CCDC28B-201ENST00000373602 OSBPL3Q9H4L5 887 aa25.8■■□□□ 1.72
CCDC28B-201ENST00000373602 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.8■■□□□ 1.72
CCDC28B-201ENST00000373602 NR2E3Q9Y5X4 410 aa25.8■■□□□ 1.72
CCDC28B-201ENST00000373602 COL11A1P12107 1806 aaPredicted RBP25.79■■□□□ 1.72
CCDC28B-201ENST00000373602 MYH4Q9Y623 1939 aa25.79■■□□□ 1.72
CCDC28B-201ENST00000373602 TRIM6-TRIM34B2RNG4 842 aa25.79■■□□□ 1.72
CCDC28B-201ENST00000373602 STAT3P40763 770 aa25.79■■□□□ 1.72
CCDC28B-201ENST00000373602 OLFML2BQ68BL8 750 aa25.79■■□□□ 1.72
CCDC28B-201ENST00000373602 NBPF3Q9H094 633 aa25.79■■□□□ 1.72
CCDC28B-201ENST00000373602 ANAPC4Q9UJX5 808 aa25.79■■□□□ 1.72
CCDC28B-201ENST00000373602 ZNF214Q9UL59 606 aaPredicted RBP25.79■■□□□ 1.72
CCDC28B-201ENST00000373602 CYP2C19P33261 490 aa25.78■■□□□ 1.72
CCDC28B-201ENST00000373602 CTDSPL2Q05D32 466 aa25.78■■□□□ 1.72
CCDC28B-201ENST00000373602 GMCL1P1Q8NEA9 526 aa25.78■■□□□ 1.72
CCDC28B-201ENST00000373602 SLC5A4Q9NY91 659 aa25.78■■□□□ 1.72
CCDC28B-201ENST00000373602 FCER1AP12319 257 aa25.77■■□□□ 1.72
CCDC28B-201ENST00000373602 NMIQ13287 307 aaPredicted RBP25.77■■□□□ 1.72
CCDC28B-201ENST00000373602 LRRC47Q8N1G4 583 aaKnown RBP25.77■■□□□ 1.72
CCDC28B-201ENST00000373602 PRPF38AQ8NAV1 312 aaKnown RBP25.77■■□□□ 1.72
CCDC28B-201ENST00000373602 RILPL2Q969X0 211 aa25.77■■□□□ 1.72
CCDC28B-201ENST00000373602 COLQQ9Y215 455 aaPredicted RBP25.77■■□□□ 1.72
CCDC28B-201ENST00000373602 EVI5O60447 810 aa25.76■■□□□ 1.71
CCDC28B-201ENST00000373602 COPB2P35606 906 aa25.76■■□□□ 1.71
CCDC28B-201ENST00000373602 C11orf49Q9H6J7 331 aa25.76■■□□□ 1.71
CCDC28B-201ENST00000373602 INCENPQ9NQS7 918 aa25.76■■□□□ 1.71
CCDC28B-201ENST00000373602 CEP290O15078 2479 aa25.75■■□□□ 1.71
CCDC28B-201ENST00000373602 CYBAP13498 195 aa25.75■■□□□ 1.71
CCDC28B-201ENST00000373602 PPP4R3BQ5MIZ7 849 aa25.75■■□□□ 1.71
CCDC28B-201ENST00000373602 ZNF589Q86UQ0 364 aaPredicted RBP25.75■■□□□ 1.71
CCDC28B-201ENST00000373602 TRPV1Q8NER1 839 aa25.75■■□□□ 1.71
CCDC28B-201ENST00000373602 MMP19Q99542 508 aa25.75■■□□□ 1.71
CCDC28B-201ENST00000373602 DDX20Q9UHI6 824 aaKnown RBP25.75■■□□□ 1.71
CCDC28B-201ENST00000373602 TACC3Q9Y6A5 838 aa25.75■■□□□ 1.71
CCDC28B-201ENST00000373602 MSCO60682 206 aa25.74■■□□□ 1.71
CCDC28B-201ENST00000373602 FGAP02671 866 aa25.74■■□□□ 1.71
CCDC28B-201ENST00000373602 FGRP09769 529 aa25.74■■□□□ 1.71
CCDC28B-201ENST00000373602 HSPD1P10809 573 aaKnown RBP25.74■■□□□ 1.71
CCDC28B-201ENST00000373602 SLFN13Q68D06 897 aa25.74■■□□□ 1.71
CCDC28B-201ENST00000373602 TEX13BQ9BXU2 312 aa25.74■■□□□ 1.71
CCDC28B-201ENST00000373602 FEM1BQ9UK73 627 aa25.74■■□□□ 1.71
CCDC28B-201ENST00000373602 ALPK3Q96L96 1907 aa25.73■■□□□ 1.71
CCDC28B-201ENST00000373602 ZMYM6O95789 1325 aa25.73■■□□□ 1.71
CCDC28B-201ENST00000373602 CCDC171Q6TFL3 1326 aa25.73■■□□□ 1.71
CCDC28B-201ENST00000373602 TSPY2A6NKD2 308 aa25.73■■□□□ 1.71
CCDC28B-201ENST00000373602 ATP2A1O14983 1001 aa25.73■■□□□ 1.71
CCDC28B-201ENST00000373602 ORC4O43929 436 aa25.73■■□□□ 1.71
CCDC28B-201ENST00000373602 SDSP20132 328 aa25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms