RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 DYMQ7RTS9 669 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 MYLK4Q86YV6 388 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-202ENST00000358808 NELFCDQ8IXH7 590 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 FAM71BQ8TC56 605 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 SPDL1Q96EA4 605 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 ESYT1Q9BSJ8 1104 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 ABCF3Q9NUQ8 709 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 ELP1O95163 1332 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 ZBTB8OSQ8IWT0 167 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 IGSF22Q8N9C0 903 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 SECISBP2LQ93073 1101 aaKnown RBP11.22□□□□□ -0.61
CLIP1-202ENST00000358808 NOP14P78316 857 aaKnown RBP11.22□□□□□ -0.61
CLIP1-202ENST00000358808 HERC4Q5GLZ8 1057 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-202ENST00000358808 C8orf58Q8NAV2 365 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 MAIP1Q8WWC4 291 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 TEKT1Q969V4 418 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 SUFUQ9UMX1 484 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 CLNS1AP54105 237 aaKnown RBP11.21□□□□□ -0.61
CLIP1-202ENST00000358808 ARHGEF6Q15052 776 aa11.21□□□□□ -0.61
CLIP1-202ENST00000358808 MAP3K21Q5TCX8 1036 aa11.21□□□□□ -0.61
CLIP1-202ENST00000358808 SYCE1Q8N0S2 351 aa11.21□□□□□ -0.61
CLIP1-202ENST00000358808 P3H4Q92791 437 aa11.21□□□□□ -0.61
CLIP1-202ENST00000358808 XAB2Q9HCS7 855 aaKnown RBP11.21□□□□□ -0.61
CLIP1-202ENST00000358808 UBN1Q9NPG3 1134 aa11.21□□□□□ -0.61
CLIP1-202ENST00000358808 PLXNC1O60486 1568 aa11.21□□□□□ -0.61
CLIP1-202ENST00000358808 RUFY3Q7L099 469 aa11.21□□□□□ -0.61
CLIP1-202ENST00000358808 TTC30BQ8N4P2 665 aa11.21□□□□□ -0.61
CLIP1-202ENST00000358808 ANKRD42Q8N9B4 389 aa11.21□□□□□ -0.61
CLIP1-202ENST00000358808 SPATA17Q96L03 361 aa11.21□□□□□ -0.61
CLIP1-202ENST00000358808 ADPGKQ9BRR6 497 aa11.21□□□□□ -0.61
CLIP1-202ENST00000358808 A0A1B0GUA9 196 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 TESPA1A2RU30 521 aaPredicted RBP11.21□□□□□ -0.62
CLIP1-202ENST00000358808 MX2P20592 715 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 DPY19L2Q6NUT2 758 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 CROCCP2Q86T23 111 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 C10orf67Q8IYJ2 551 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 RNF10Q8N5U6 811 aaKnown RBP11.21□□□□□ -0.62
CLIP1-202ENST00000358808 ARMT1Q9H993 441 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 NDUFAB1O14561 156 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 SETSIPP0DME0 302 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 KRT33BQ14525 404 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 PRPSAP1Q14558 356 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 GNPTABQ3T906 1256 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 CCDC38Q502W7 563 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 MRPL50Q8N5N7 158 aaKnown RBP11.21□□□□□ -0.62
CLIP1-202ENST00000358808 RDH13Q8NBN7 331 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 EYA1Q99502 592 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 RABEP2Q9H5N1 569 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 SFMBT1Q9UHJ3 866 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 COL17A1Q9UMD9 1497 aaPredicted RBP11.21□□□□□ -0.62
CLIP1-202ENST00000358808 ABCC3O15438 1527 aa11.21□□□□□ -0.62
CLIP1-202ENST00000358808 HEXIM1O94992 359 aaKnown RBP11.2□□□□□ -0.62
CLIP1-202ENST00000358808 SLC4A1P02730 911 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 TROVE2P10155 538 aaKnown RBP eCLIP11.2□□□□□ -0.62
CLIP1-202ENST00000358808 ECE1P42892 770 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 DLGAP5Q15398 846 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 MMEL1Q495T6 779 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 HP1BP3Q5SSJ5 553 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-202ENST00000358808 MIER3Q7Z3K6 550 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 TPH2Q8IWU9 490 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 RPS6KC1Q96S38 1066 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 TUBBP07437 444 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 C8orf34Q49A92 452 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 MCUQ8NE86 351 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 HAUS1Q96CS2 278 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 LRGUKQ96M69 825 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 POLKQ9UBT6 870 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 TMEM94Q12767 1356 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 NVLO15381 856 aaKnown RBP11.2□□□□□ -0.62
CLIP1-202ENST00000358808 IQCB1Q15051 598 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 ACRBPQ8NEB7 543 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 APOL6Q9BWW8 343 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 LRWD1Q9UFC0 647 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 BCS1LQ9Y276 419 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 ITGA6P23229 1130 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 POLR2BP30876 1174 aaKnown RBP11.2□□□□□ -0.62
CLIP1-202ENST00000358808 PHBP35232 272 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 MYL5Q02045 173 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 NUCB1Q02818 461 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 CALCRLQ16602 461 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 HADHQ16836 314 aaKnown RBP11.2□□□□□ -0.62
CLIP1-202ENST00000358808 ANKRD35Q8N283 1001 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 ATP6V1E2Q96A05 226 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.2□□□□□ -0.623e-6■■■■■ 31.2
CLIP1-202ENST00000358808 SYNRGQ9UMZ2 1314 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 B4E1Z4 1266 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 DEXIO95424 95 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 IGBP1P78318 339 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 BICC1Q9H694 974 aaKnown RBP11.2□□□□□ -0.62
CLIP1-202ENST00000358808 AATFQ9NY61 560 aaKnown RBP eCLIP11.2□□□□□ -0.62
CLIP1-202ENST00000358808 NUB1Q9Y5A7 615 aa11.2□□□□□ -0.62
CLIP1-202ENST00000358808 PIK3C2GO75747 1445 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 LIG4P49917 911 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 SLC12A1Q13621 1099 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 TBCCQ15814 346 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 LONRF3Q496Y0 759 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 CREB3L3Q68CJ9 461 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 DENND2CQ68D51 928 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 RUFY4Q6ZNE9 571 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 DHX32Q7L7V1 743 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms