RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SHISA4Q96DD7 197 aa17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 PHF20Q9BVI0 1012 aa17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 FOXP1Q9H334 677 aaPredicted RBP17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 PLA2G6O60733 806 aa17.23■□□□□ 0.35
CCDC88C-202ENST00000334448 GOLGA8HP0CJ92 632 aa17.23■□□□□ 0.35
CCDC88C-202ENST00000334448 KRT85P78386 507 aa17.23■□□□□ 0.35
CCDC88C-202ENST00000334448 ATP2B2Q01814 1243 aa17.23■□□□□ 0.35
CCDC88C-202ENST00000334448 GUCY1B3Q02153 619 aa17.23■□□□□ 0.35
CCDC88C-202ENST00000334448 OTUD7BQ6GQQ9 843 aa17.23■□□□□ 0.35
CCDC88C-202ENST00000334448 SCYL3Q8IZE3 742 aa17.23■□□□□ 0.35
CCDC88C-202ENST00000334448 KLRG1Q96E93 195 aa17.23■□□□□ 0.35
CCDC88C-202ENST00000334448 WDR18Q9BV38 432 aa17.23■□□□□ 0.35
CCDC88C-202ENST00000334448 GJB4Q9NTQ9 266 aa17.23■□□□□ 0.35
CCDC88C-202ENST00000334448 SCAF8Q9UPN6 1271 aaKnown RBP17.23■□□□□ 0.35
CCDC88C-202ENST00000334448 ELP1O95163 1332 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 MYH4Q9Y623 1939 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 SLC1A4P43007 532 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 DNM1Q05193 864 aaKnown RBP17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 SAFBQ15424 915 aaKnown RBP eCLIP17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 NPY5RQ15761 445 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 CSPP1Q1MSJ5 1256 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 MCTP1Q6DN14 999 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 GALNT17Q6IS24 598 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 USP48Q86UV5 1035 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 DAGLBQ8NCG7 672 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 ACER1Q8TDN7 264 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 RRP36Q96EU6 259 aaKnown RBP17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 KIAA1683Q9H0B3 1180 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 VCPKMTQ9H867 229 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 GOPCQ9HD26 462 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 BARHL2Q9NY43 387 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 PAPPA2Q9BXP8 1791 aa17.22■□□□□ 0.35
CCDC88C-202ENST00000334448 ESYT2A0FGR8 921 aa17.21■□□□□ 0.35
CCDC88C-202ENST00000334448 KIF28PB7ZC32 967 aa17.21■□□□□ 0.35
CCDC88C-202ENST00000334448 CALML3P27482 149 aa17.21■□□□□ 0.35
CCDC88C-202ENST00000334448 PPP1R18Q6NYC8 613 aa17.21■□□□□ 0.35
CCDC88C-202ENST00000334448 DIS3L2Q8IYB7 885 aaKnown RBP17.21■□□□□ 0.35
CCDC88C-202ENST00000334448 CCDC148Q8NFR7 591 aa17.21■□□□□ 0.35
CCDC88C-202ENST00000334448 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.21■□□□□ 0.35
CCDC88C-202ENST00000334448 SCAND2PQ9GZW5 306 aaPredicted RBP17.21■□□□□ 0.35
CCDC88C-202ENST00000334448 LMBRD1Q9NUN5 540 aa17.21■□□□□ 0.35
CCDC88C-202ENST00000334448 FRMPD2Q68DX3 1309 aaPredicted RBP17.21■□□□□ 0.34
CCDC88C-202ENST00000334448 DOCK1Q14185 1865 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 STXBP3O00186 592 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 BMP3P12645 472 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 INPP5BP32019 993 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 ECE1P42892 770 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 FOSBP53539 338 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 CCDC96Q2M329 555 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 MYSM1Q5VVJ2 828 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 WWC2Q6AWC2 1192 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 KRT26Q7Z3Y9 468 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 NOSTRINQ8IVI9 506 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 TEX2Q8IWB9 1127 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 CCDC12Q8WUD4 166 aaPredicted RBP17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 LPAR1Q92633 364 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 TNFRSF25Q93038 417 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 ZNF396Q96N95 335 aaPredicted RBP17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 WRNIP1Q96S55 665 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 JMJD4Q9H9V9 463 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 VPS54Q9P1Q0 977 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 SEC63Q9UGP8 760 aaKnown RBP17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 CFAP45Q9UL16 551 aa17.2■□□□□ 0.34
CCDC88C-202ENST00000334448 PNMA6FA0A0J9YX94 578 aa17.19■□□□□ 0.34
CCDC88C-202ENST00000334448 ADM5C9JUS6 153 aa17.19■□□□□ 0.34
CCDC88C-202ENST00000334448 MAP3K11Q16584 847 aa17.19■□□□□ 0.34
CCDC88C-202ENST00000334448 SKOR2Q2VWA4 1001 aaPredicted RBP17.19■□□□□ 0.34
CCDC88C-202ENST00000334448 ADGRF4Q8IZF3 695 aa17.19■□□□□ 0.34
CCDC88C-202ENST00000334448 CHAMP1Q96JM3 812 aa17.19■□□□□ 0.34
CCDC88C-202ENST00000334448 BRMS1Q9HCU9 246 aa17.19■□□□□ 0.34
CCDC88C-202ENST00000334448 GPCPD1Q9NPB8 672 aa17.19■□□□□ 0.34
CCDC88C-202ENST00000334448 KCNJ14Q9UNX9 436 aa17.19■□□□□ 0.34
CCDC88C-202ENST00000334448 MTMR7Q9Y216 660 aa17.19■□□□□ 0.34
CCDC88C-202ENST00000334448 CNPY2Q9Y2B0 182 aa17.19■□□□□ 0.34
CCDC88C-202ENST00000334448 MORC2Q9Y6X9 1032 aaPredicted RBP17.19■□□□□ 0.34
CCDC88C-202ENST00000334448 hCG_1642624A0A1W2PR95 340 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 USP2O75604 605 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 VEGFAP15692 232 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 KRT2P35908 639 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 NASPP49321 788 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 TTBK2Q6IQ55 1244 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 TYW1BQ6NUM6 668 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 FAM173BQ6P4H8 233 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 KCTD1Q719H9 257 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 C12orf42Q96LP6 360 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 PIGSQ96S52 555 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 UBA5Q9GZZ9 404 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 ZMYND12Q9H0C1 365 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 AS3MTQ9HBK9 375 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 POLR3EQ9NVU0 708 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 ATAD5Q96QE3 1844 aa17.18■□□□□ 0.34
CCDC88C-202ENST00000334448 BTBD18B2RXH4 712 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 M0R2N6 131 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 ZBTB5O15062 677 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 WDR46O15213 610 aaKnown RBP17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 YEATS4O95619 227 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 PTPRAP18433 802 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 USP14P54578 494 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 KIAA1755Q5JYT7 1200 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 PRAMEF18Q5VWM3 479 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms