RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 SASH3O75995 380 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 GOLGA8FQ08AF8 430 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 GOLGA8DPQ0D2H9 430 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 CEP112Q8N8E3 955 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 CAGE1Q8TC20 777 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 MXD3Q9BW11 206 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 FAM204AQ9H8W3 233 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 SLC12A7Q9Y666 1083 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 GPR162Q16538 588 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 GRIPAP1Q4V328 841 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 CCDC82Q8N4S0 544 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 SBF2Q86WG5 1849 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 CTAGE15A4D2H0 777 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 CTAGE8P0CG41 777 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 PPARAQ07869 468 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 DLGAP5Q15398 846 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 AKNAD1Q5T1N1 836 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 RNF187Q5TA31 235 aaPredicted RBP12.3□□□□□ -0.44
LSM3-201ENST00000306024 CTAGE6Q86UF2 777 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 PPFIBP1Q86W92 1011 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 CTAGE4Q8IX94 777 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 CPLX3Q8WVH0 158 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 BAG1Q99933 345 aaPredicted RBP12.3□□□□□ -0.44
LSM3-201ENST00000306024 PSD3Q9NYI0 1048 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 WTAPQ15007 396 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 SAMD1Q6SPF0 538 aaPredicted RBP12.3□□□□□ -0.44
LSM3-201ENST00000306024 FAM53CQ9NYF3 392 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 STX8Q9UNK0 236 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 PPP2R2CQ9Y2T4 447 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 MED23Q9ULK4 1368 aa12.3□□□□□ -0.44
LSM3-201ENST00000306024 TRIM29Q14134 588 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 PTPN21Q16825 1174 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 MAP9Q49MG5 647 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 WWC2Q6AWC2 1192 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 OSBPL5Q9H0X9 879 aaPredicted RBP12.29□□□□□ -0.44
LSM3-201ENST00000306024 ZSWIM6Q9HCJ5 1215 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 HOOK1Q9UJC3 728 aaKnown RBP12.29□□□□□ -0.44
LSM3-201ENST00000306024 CYP2D7A0A087X1C5 515 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 ARHGAP6O43182 974 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 TSPY3P0CV98 308 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 TSPY8P0CW00 308 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 CHRM1P11229 460 aaPredicted RBP12.29□□□□□ -0.44
LSM3-201ENST00000306024 ARMCX5Q6P1M9 558 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 ATP8A2Q9NTI2 1148 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 CCT5P48643 541 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 FOXR1Q6PIV2 292 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 CEP57Q86XR8 500 aa12.29□□□□□ -0.44
LSM3-201ENST00000306024 CCDC196A0A1B0GTZ2 297 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 PPFIA4O75335 1185 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 OTUD6BQ8N6M0 293 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 DHX58Q96C10 678 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 JPH2Q9BR39 696 aaPredicted RBP12.28□□□□□ -0.44
LSM3-201ENST00000306024 KLRG2A4D1S0 409 aaPredicted RBP12.28□□□□□ -0.44
LSM3-201ENST00000306024 GOLGA8AA7E2F4 631 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 NEBLO76041 1014 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 CORO7P57737 925 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 FAM71BQ8TC56 605 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 SH3RF3Q8TEJ3 882 aaPredicted RBP12.28□□□□□ -0.44
LSM3-201ENST00000306024 GSG1L2A8MUP6 293 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 H3BQF6 201 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 ZNF569Q5MCW4 686 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 CIAPIN1Q6FI81 312 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 CCDC148Q8NFR7 591 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 DESI2Q9BSY9 194 aa12.28□□□□□ -0.44
LSM3-201ENST00000306024 ARPP21Q9UBL0 812 aaPredicted RBP12.28□□□□□ -0.44
LSM3-201ENST00000306024 DPCR1Q3MIW9 517 aa12.27□□□□□ -0.44
LSM3-201ENST00000306024 FUT8Q9BYC5 575 aa12.27□□□□□ -0.44
LSM3-201ENST00000306024 FTOQ9C0B1 505 aaKnown RBP eCLIP12.27□□□□□ -0.44
LSM3-201ENST00000306024 TCHHQ07283 1943 aa12.27□□□□□ -0.44
LSM3-201ENST00000306024 PES1O00541 588 aaKnown RBP12.27□□□□□ -0.45
LSM3-201ENST00000306024 CCDC175P0C221 793 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 USP17L8P0C7I0 530 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 RXRAP19793 462 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 IARSP41252 1262 aaKnown RBP12.27□□□□□ -0.45
LSM3-201ENST00000306024 IFIT1BQ5T764 474 aaKnown RBP12.27□□□□□ -0.45
LSM3-201ENST00000306024 CATIPQ7Z7H3 387 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 POTEDQ86YR6 584 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 TRIM22Q8IYM9 498 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 CD2APQ9Y5K6 639 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 CAPN7Q9Y6W3 813 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 MROH7-TTC4A0A0A0MT08 1334 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 ANKRD36CQ5JPF3 1778 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 ZBTB43O43298 467 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 KIF1CO43896 1103 aaKnown RBP12.27□□□□□ -0.45
LSM3-201ENST00000306024 METAP2P50579 478 aaKnown RBP eCLIP12.27□□□□□ -0.45
LSM3-201ENST00000306024 IKQ13123 557 aaPredicted RBP12.27□□□□□ -0.45
LSM3-201ENST00000306024 TNIP1Q15025 636 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 STRIP1Q5VSL9 837 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 FAM76AQ8TAV0 307 aa12.27□□□□□ -0.45
LSM3-201ENST00000306024 MYH3P11055 1940 aa12.26□□□□□ -0.45
LSM3-201ENST00000306024 IL1R1P14778 569 aa12.26□□□□□ -0.45
LSM3-201ENST00000306024 SARNPP82979 210 aaKnown RBP12.26□□□□□ -0.45
LSM3-201ENST00000306024 CLRN2A0PK11 232 aa12.26□□□□□ -0.45
LSM3-201ENST00000306024 CTAGE9A4FU28 777 aa12.26□□□□□ -0.45
LSM3-201ENST00000306024 CRKP46108 304 aa12.26□□□□□ -0.45
LSM3-201ENST00000306024 CACNB3P54284 484 aa12.26□□□□□ -0.45
LSM3-201ENST00000306024 DHX40Q8IX18 779 aaKnown RBP12.26□□□□□ -0.45
LSM3-201ENST00000306024 CTCFLQ8NI51 663 aaPredicted RBP12.26□□□□□ -0.45
LSM3-201ENST00000306024 GDAP1L1Q96MZ0 367 aa12.26□□□□□ -0.45
LSM3-201ENST00000306024 ABCB6Q9NP58 842 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms