RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 PDE4AP27815 886 aa17.19■□□□□ 0.34
HMGN3-201ENST00000275036 CCND3P30281 292 aaPredicted RBP17.19■□□□□ 0.34
HMGN3-201ENST00000275036 NPLOC4Q8TAT6 608 aa17.19■□□□□ 0.34
HMGN3-201ENST00000275036 SPATC1LQ9H0A9 340 aa17.19■□□□□ 0.34
HMGN3-201ENST00000275036 HMX1Q9NP08 348 aaPredicted RBP17.19■□□□□ 0.34
HMGN3-201ENST00000275036 INCENPQ9NQS7 918 aa17.19■□□□□ 0.34
HMGN3-201ENST00000275036 HOXC10Q9NYD6 342 aa17.19■□□□□ 0.34
HMGN3-201ENST00000275036 SLC15A5A6NIM6 579 aa17.18■□□□□ 0.34
HMGN3-201ENST00000275036 IGHA2P01877 340 aa17.18■□□□□ 0.34
HMGN3-201ENST00000275036 CTDSPL2Q05D32 466 aa17.18■□□□□ 0.34
HMGN3-201ENST00000275036 MCMDC2Q4G0Z9 681 aa17.18■□□□□ 0.34
HMGN3-201ENST00000275036 TICAM2Q86XR7 235 aa17.18■□□□□ 0.34
HMGN3-201ENST00000275036 ZNF444Q8N0Y2 327 aaPredicted RBP17.18■□□□□ 0.34
HMGN3-201ENST00000275036 PAWRQ96IZ0 340 aaKnown RBP17.18■□□□□ 0.34
HMGN3-201ENST00000275036 NUP88Q99567 741 aaPredicted RBP17.18■□□□□ 0.34
HMGN3-201ENST00000275036 NYAP2Q9P242 653 aa17.18■□□□□ 0.34
HMGN3-201ENST00000275036 ADAMTS5Q9UNA0 930 aa17.18■□□□□ 0.34
HMGN3-201ENST00000275036 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.18■□□□□ 0.34
HMGN3-201ENST00000275036 PLIN4Q96Q06 1357 aa17.17■□□□□ 0.34
HMGN3-201ENST00000275036 HOXC6P09630 235 aa17.17■□□□□ 0.34
HMGN3-201ENST00000275036 ERCC3P19447 782 aa17.17■□□□□ 0.34
HMGN3-201ENST00000275036 SDSP20132 328 aa17.17■□□□□ 0.34
HMGN3-201ENST00000275036 TMEM132BQ14DG7 1078 aa17.17■□□□□ 0.34
HMGN3-201ENST00000275036 FAM47AQ5JRC9 791 aa17.17■□□□□ 0.34
HMGN3-201ENST00000275036 FAM83BQ5T0W9 1011 aa17.17■□□□□ 0.34
HMGN3-201ENST00000275036 SAMD1Q6SPF0 538 aaPredicted RBP17.17■□□□□ 0.34
HMGN3-201ENST00000275036 DPF3Q92784 378 aa17.17■□□□□ 0.34
HMGN3-201ENST00000275036 CEP95Q96GE4 821 aa17.17■□□□□ 0.34
HMGN3-201ENST00000275036 CWC22Q9HCG8 908 aaKnown RBP17.17■□□□□ 0.34
HMGN3-201ENST00000275036 GOPCQ9HD26 462 aa17.17■□□□□ 0.34
HMGN3-201ENST00000275036 RANBP2P49792 3224 aaKnown RBP17.16■□□□□ 0.34
HMGN3-201ENST00000275036 HSPD1P10809 573 aaKnown RBP17.16■□□□□ 0.34
HMGN3-201ENST00000275036 PDE4BQ07343 736 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 ALX1Q15699 326 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 HABP4Q5JVS0 413 aaKnown RBP17.16■□□□□ 0.34
HMGN3-201ENST00000275036 LHX8Q68G74 356 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 TRMT44Q8IYL2 757 aaKnown RBP17.16■□□□□ 0.34
HMGN3-201ENST00000275036 SHCBP1Q8NEM2 672 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 REPS2Q8NFH8 660 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 NEDD1Q8NHV4 660 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 ZNF287Q9HBT7 754 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 MTMR4Q9NYA4 1195 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 CLIP2Q9UDT6 1046 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 ANAPC4Q9UJX5 808 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 OGDHLQ9ULD0 1010 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 COLQQ9Y215 455 aaPredicted RBP17.16■□□□□ 0.34
HMGN3-201ENST00000275036 LAMA4Q16363 1823 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 DNAH12Q6ZR08 3092 aa17.16■□□□□ 0.34
HMGN3-201ENST00000275036 RAD21O60216 631 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 COBLO75128 1261 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 NDUFB10O96000 172 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 FGAP02671 866 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 ADORA2AP29274 412 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 TFAP4Q01664 338 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 PLS1Q14651 629 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 MB21D1Q8N884 522 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 TRPV1Q8NER1 839 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 MKL1Q969V6 931 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 HTATIP2Q9BUP3 242 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 PPP1R9AQ9ULJ8 1098 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 IVNS1ABPQ9Y6Y0 642 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 CCDC171Q6TFL3 1326 aa17.15■□□□□ 0.34
HMGN3-201ENST00000275036 PLXNA1Q9UIW2 1896 aa17.14■□□□□ 0.33
HMGN3-201ENST00000275036 F5H6K3 240 aa17.14■□□□□ 0.33
HMGN3-201ENST00000275036 VWA5AO00534 786 aa17.14■□□□□ 0.33
HMGN3-201ENST00000275036 SLC3A2P08195 630 aaKnown RBP17.14■□□□□ 0.33
HMGN3-201ENST00000275036 TSPY3P0CV98 308 aa17.14■□□□□ 0.33
HMGN3-201ENST00000275036 TSPY8P0CW00 308 aa17.14■□□□□ 0.33
HMGN3-201ENST00000275036 CYP2C19P33261 490 aa17.14■□□□□ 0.33
HMGN3-201ENST00000275036 KLRC3Q07444 240 aa17.14■□□□□ 0.33
HMGN3-201ENST00000275036 NCAPG2Q86XI2 1143 aa17.14■□□□□ 0.33
HMGN3-201ENST00000275036 LRRC47Q8N1G4 583 aaKnown RBP17.14■□□□□ 0.33
HMGN3-201ENST00000275036 ANKLE1Q8NAG6 615 aa17.14■□□□□ 0.33
HMGN3-201ENST00000275036 ZNF214Q9UL59 606 aaPredicted RBP17.14■□□□□ 0.33
HMGN3-201ENST00000275036 TTLL1O95922 423 aa17.13■□□□□ 0.33
HMGN3-201ENST00000275036 GSPT1P15170 499 aaKnown RBP17.13■□□□□ 0.33
HMGN3-201ENST00000275036 NBPF3Q9H094 633 aa17.13■□□□□ 0.33
HMGN3-201ENST00000275036 IL17RBQ9NRM6 502 aa17.13■□□□□ 0.33
HMGN3-201ENST00000275036 PFASO15067 1338 aa17.13■□□□□ 0.33
HMGN3-201ENST00000275036 ZMYM6O95789 1325 aa17.13■□□□□ 0.33
HMGN3-201ENST00000275036 NMT2O60551 498 aa17.12■□□□□ 0.33
HMGN3-201ENST00000275036 FGRP09769 529 aa17.12■□□□□ 0.33
HMGN3-201ENST00000275036 CAPN2P17655 700 aa17.12■□□□□ 0.33
HMGN3-201ENST00000275036 CWC27Q6UX04 472 aaKnown RBP17.12■□□□□ 0.33
HMGN3-201ENST00000275036 NECAB2Q7Z6G3 386 aa17.12■□□□□ 0.33
HMGN3-201ENST00000275036 MROH8Q9H579 483 aa17.12■□□□□ 0.33
HMGN3-201ENST00000275036 PCDH10Q9P2E7 1040 aa17.12■□□□□ 0.33
HMGN3-201ENST00000275036 SMCHD1A6NHR9 2005 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 STRNO43815 780 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 ORC4O43929 436 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 COL6A1P12109 1028 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 CYBAP13498 195 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 HAND2P61296 217 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 TTC22Q5TAA0 569 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 MFSD14CQ5VZR4 134 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 CHRDL2Q6WN34 429 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 RASGRP2Q7LDG7 609 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 DPP9Q86TI2 863 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 RIOX2Q8IUF8 465 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 SLF1Q9BQI6 1058 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms