RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 NBPF3Q9H094 633 aa27.23■■□□□ 1.95
LSM4-201ENST00000252816 SPATC1LQ9H0A9 340 aa27.23■■□□□ 1.95
LSM4-201ENST00000252816 IL25Q9H293 177 aa27.23■■□□□ 1.95
LSM4-201ENST00000252816 IL17RBQ9NRM6 502 aa27.23■■□□□ 1.95
LSM4-201ENST00000252816 PARP14Q460N5 1801 aa27.23■■□□□ 1.95
LSM4-201ENST00000252816 TSPY2A6NKD2 308 aa27.22■■□□□ 1.95
LSM4-201ENST00000252816 WDR78Q5VTH9 848 aa27.22■■□□□ 1.95
LSM4-201ENST00000252816 MB21D1Q8N884 522 aa27.22■■□□□ 1.95
LSM4-201ENST00000252816 UNC93B1Q9H1C4 597 aa27.22■■□□□ 1.95
LSM4-201ENST00000252816 ADAMTS5Q9UNA0 930 aa27.22■■□□□ 1.95
LSM4-201ENST00000252816 MYH4Q9Y623 1939 aa27.22■■□□□ 1.95
LSM4-201ENST00000252816 RANBP6O60518 1105 aaKnown RBP27.21■■□□□ 1.95
LSM4-201ENST00000252816 NMT2O60551 498 aa27.21■■□□□ 1.95
LSM4-201ENST00000252816 RNF208Q9H0X6 261 aa27.21■■□□□ 1.95
LSM4-201ENST00000252816 CWC22Q9HCG8 908 aaKnown RBP27.21■■□□□ 1.95
LSM4-201ENST00000252816 PPP1R9AQ9ULJ8 1098 aa27.21■■□□□ 1.95
LSM4-201ENST00000252816 XRCC5P13010 732 aaKnown RBP27.2■■□□□ 1.94
LSM4-201ENST00000252816 TRIM32Q13049 653 aa27.2■■□□□ 1.94
LSM4-201ENST00000252816 TMEM132BQ14DG7 1078 aa27.2■■□□□ 1.94
LSM4-201ENST00000252816 TBC1D10CQ8IV04 446 aa27.2■■□□□ 1.94
LSM4-201ENST00000252816 TRIB2Q92519 343 aa27.2■■□□□ 1.94
LSM4-201ENST00000252816 SYNPO2Q9UMS6 1093 aa27.2■■□□□ 1.94
LSM4-201ENST00000252816 HMGCRP04035 888 aa27.19■■□□□ 1.94
LSM4-201ENST00000252816 PTPREP23469 700 aa27.19■■□□□ 1.94
LSM4-201ENST00000252816 RRP12Q5JTH9 1297 aaKnown RBP27.19■■□□□ 1.94
LSM4-201ENST00000252816 GMCL1P1Q8NEA9 526 aa27.19■■□□□ 1.94
LSM4-201ENST00000252816 TOMM22Q9NS69 142 aa27.19■■□□□ 1.94
LSM4-201ENST00000252816 VWA5AO00534 786 aa27.18■■□□□ 1.94
LSM4-201ENST00000252816 GJB1P08034 283 aa27.18■■□□□ 1.94
LSM4-201ENST00000252816 RGS2P41220 211 aa27.18■■□□□ 1.94
LSM4-201ENST00000252816 PLS1Q14651 629 aa27.18■■□□□ 1.94
LSM4-201ENST00000252816 NKX2-3Q8TAU0 364 aa27.18■■□□□ 1.94
LSM4-201ENST00000252816 SHISA4Q96DD7 197 aa27.18■■□□□ 1.94
LSM4-201ENST00000252816 SLC15A5A6NIM6 579 aa27.17■■□□□ 1.94
LSM4-201ENST00000252816 ERCC3P19447 782 aa27.17■■□□□ 1.94
LSM4-201ENST00000252816 NOVP48745 357 aa27.17■■□□□ 1.94
LSM4-201ENST00000252816 MAP2K5Q13163 448 aa27.17■■□□□ 1.94
LSM4-201ENST00000252816 GRB14Q14449 540 aa27.17■■□□□ 1.94
LSM4-201ENST00000252816 AKNAD1Q5T1N1 836 aa27.17■■□□□ 1.94
LSM4-201ENST00000252816 SLFN13Q68D06 897 aa27.17■■□□□ 1.94
LSM4-201ENST00000252816 SHCBP1Q8NEM2 672 aa27.17■■□□□ 1.94
LSM4-201ENST00000252816 REPS2Q8NFH8 660 aa27.17■■□□□ 1.94
LSM4-201ENST00000252816 SLF1Q9BQI6 1058 aa27.17■■□□□ 1.94
LSM4-201ENST00000252816 DSCC1Q9BVC3 393 aa27.17■■□□□ 1.94
LSM4-201ENST00000252816 STX8Q9UNK0 236 aa27.17■■□□□ 1.94
LSM4-201ENST00000252816 CHMLP26374 656 aa27.16■■□□□ 1.94
LSM4-201ENST00000252816 GJA8P48165 433 aa27.16■■□□□ 1.94
LSM4-201ENST00000252816 CCL14Q16627 93 aa27.16■■□□□ 1.94
LSM4-201ENST00000252816 STAG1Q8WVM7 1258 aa27.16■■□□□ 1.94
LSM4-201ENST00000252816 APBA2Q99767 749 aa27.16■■□□□ 1.94
LSM4-201ENST00000252816 IVNS1ABPQ9Y6Y0 642 aa27.16■■□□□ 1.94
LSM4-201ENST00000252816 PPP4R3BQ5MIZ7 849 aa27.15■■□□□ 1.94
LSM4-201ENST00000252816 MFSD6Q6ZSS7 791 aa27.15■■□□□ 1.94
LSM4-201ENST00000252816 SKAP1Q86WV1 359 aa27.15■■□□□ 1.94
LSM4-201ENST00000252816 PAK6Q9NQU5 681 aaPredicted RBP27.15■■□□□ 1.94
LSM4-201ENST00000252816 PDE4DIPQ5VU43 2346 aa27.15■■□□□ 1.94
LSM4-201ENST00000252816 COL11A1P12107 1806 aaPredicted RBP27.14■■□□□ 1.94
LSM4-201ENST00000252816 ZNF213O14771 459 aa27.14■■□□□ 1.94
LSM4-201ENST00000252816 ZKSCAN1P17029 563 aaPredicted RBP27.14■■□□□ 1.94
LSM4-201ENST00000252816 CENPQQ7L2Z9 268 aaPredicted RBP27.14■■□□□ 1.94
LSM4-201ENST00000252816 NCAPG2Q86XI2 1143 aa27.14■■□□□ 1.94
LSM4-201ENST00000252816 CHMP4CQ96CF2 233 aa27.14■■□□□ 1.94
LSM4-201ENST00000252816 ZNF214Q9UL59 606 aaPredicted RBP27.14■■□□□ 1.94
LSM4-201ENST00000252816 NEDD4P46934 1319 aa27.14■■□□□ 1.93
LSM4-201ENST00000252816 PCP11498 1178 aaKnown RBP27.13■■□□□ 1.93
LSM4-201ENST00000252816 BMP3P12645 472 aa27.13■■□□□ 1.93
LSM4-201ENST00000252816 MAP3K21Q5TCX8 1036 aa27.13■■□□□ 1.93
LSM4-201ENST00000252816 TRMT44Q8IYL2 757 aaKnown RBP27.13■■□□□ 1.93
LSM4-201ENST00000252816 PRPF38AQ8NAV1 312 aaKnown RBP27.13■■□□□ 1.93
LSM4-201ENST00000252816 U2AF1L4Q8WU68 220 aaKnown RBP27.13■■□□□ 1.93
LSM4-201ENST00000252816 MROH8Q9H579 483 aa27.13■■□□□ 1.93
LSM4-201ENST00000252816 RAD50Q92878 1312 aa27.13■■□□□ 1.93
LSM4-201ENST00000252816 HOXC6P09630 235 aa27.12■■□□□ 1.93
LSM4-201ENST00000252816 STAT3P40763 770 aa27.12■■□□□ 1.93
LSM4-201ENST00000252816 RASGRP2Q7LDG7 609 aa27.12■■□□□ 1.93
LSM4-201ENST00000252816 RIOX2Q8IUF8 465 aa27.12■■□□□ 1.93
LSM4-201ENST00000252816 NPLOC4Q8TAT6 608 aa27.12■■□□□ 1.93
LSM4-201ENST00000252816 GMCL1Q96IK5 515 aa27.12■■□□□ 1.93
LSM4-201ENST00000252816 DEFB118Q96PH6 123 aa27.12■■□□□ 1.93
LSM4-201ENST00000252816 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.12■■□□□ 1.931e-7■■■□□ 17.2
LSM4-201ENST00000252816 RNF41Q9H4P4 317 aaPredicted RBP27.12■■□□□ 1.93
LSM4-201ENST00000252816 TCP11L1Q9NUJ3 509 aa27.12■■□□□ 1.93
LSM4-201ENST00000252816 FLRT1Q9NZU1 646 aa27.12■■□□□ 1.93
LSM4-201ENST00000252816 FEM1BQ9UK73 627 aa27.12■■□□□ 1.93
LSM4-201ENST00000252816 LAMA4Q16363 1823 aa27.11■■□□□ 1.93
LSM4-201ENST00000252816 STRNO43815 780 aa27.11■■□□□ 1.93
LSM4-201ENST00000252816 SGPL1O95470 568 aa27.11■■□□□ 1.93
LSM4-201ENST00000252816 SLC25A27O95847 323 aa27.11■■□□□ 1.93
LSM4-201ENST00000252816 PRKAR2AP13861 404 aaKnown RBP27.11■■□□□ 1.93
LSM4-201ENST00000252816 MCCP23508 829 aa27.11■■□□□ 1.93
LSM4-201ENST00000252816 ADORA2AP29274 412 aa27.11■■□□□ 1.93
LSM4-201ENST00000252816 KIFC2Q96AC6 838 aa27.11■■□□□ 1.93
LSM4-201ENST00000252816 RPTORQ8N122 1335 aa27.11■■□□□ 1.93
LSM4-201ENST00000252816 SLC1A4P43007 532 aa27.1■■□□□ 1.93
LSM4-201ENST00000252816 CACNB2Q08289 660 aaPredicted RBP27.1■■□□□ 1.93
LSM4-201ENST00000252816 RUFY2Q8WXA3 655 aa27.1■■□□□ 1.93
LSM4-201ENST00000252816 CTNNA3Q9UI47 895 aa27.1■■□□□ 1.93
LSM4-201ENST00000252816 TMEM232C9JQI7 657 aa27.09■■□□□ 1.93
LSM4-201ENST00000252816 COBLO75128 1261 aa27.09■■□□□ 1.93
LSM4-201ENST00000252816 IMMTQ16891 758 aaKnown RBP27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms