RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 DNAJC2Q99543 621 aaKnown RBP12.48□□□□□ -0.41
VPS50-201ENST00000251739 C11orf49Q9H6J7 331 aa12.48□□□□□ -0.41
VPS50-201ENST00000251739 RPAP3Q9H6T3 665 aaPredicted RBP12.48□□□□□ -0.41
VPS50-201ENST00000251739 CABP5Q9NP86 173 aa12.48□□□□□ -0.41
VPS50-201ENST00000251739 WDR70Q9NW82 654 aa12.48□□□□□ -0.41
VPS50-201ENST00000251739 FLRT1Q9NZU1 646 aa12.48□□□□□ -0.41
VPS50-201ENST00000251739 STAP2Q9UGK3 403 aa12.48□□□□□ -0.41
VPS50-201ENST00000251739 COG6Q9Y2V7 657 aa12.48□□□□□ -0.41
VPS50-201ENST00000251739 A0A0C4DFX4 3053 aa12.47□□□□□ -0.41
VPS50-201ENST00000251739 APBB1O00213 710 aa12.47□□□□□ -0.41
VPS50-201ENST00000251739 POLR3DP05423 398 aaPredicted RBP12.47□□□□□ -0.41
VPS50-201ENST00000251739 IFIT2P09913 472 aaKnown RBP12.47□□□□□ -0.41
VPS50-201ENST00000251739 ATP5JP18859 108 aa12.47□□□□□ -0.41
VPS50-201ENST00000251739 PTPREP23469 700 aa12.47□□□□□ -0.41
VPS50-201ENST00000251739 KIAA1755Q5JYT7 1200 aa12.47□□□□□ -0.41
VPS50-201ENST00000251739 SIAH1Q8IUQ4 282 aa12.47□□□□□ -0.41
VPS50-201ENST00000251739 ARMT1Q9H993 441 aa12.47□□□□□ -0.41
VPS50-201ENST00000251739 PAG1Q9NWQ8 432 aa12.47□□□□□ -0.41
VPS50-201ENST00000251739 SMCHD1A6NHR9 2005 aa12.46□□□□□ -0.41
VPS50-201ENST00000251739 SMIM22K7EJ46 135 aa12.46□□□□□ -0.41
VPS50-201ENST00000251739 GLRX3O76003 335 aaKnown RBP12.46□□□□□ -0.41
VPS50-201ENST00000251739 MBD4O95243 580 aa12.46□□□□□ -0.41
VPS50-201ENST00000251739 SLFNL1Q499Z3 407 aa12.46□□□□□ -0.41
VPS50-201ENST00000251739 TMEM179Q6ZVK1 233 aa12.46□□□□□ -0.41
VPS50-201ENST00000251739 CCAR1Q8IX12 1150 aaKnown RBP12.46□□□□□ -0.41
VPS50-201ENST00000251739 HAUS7Q99871 368 aa12.46□□□□□ -0.41
VPS50-201ENST00000251739 SWAP70Q9UH65 585 aa12.46□□□□□ -0.41
VPS50-201ENST00000251739 ZMYND8Q9ULU4 1186 aaPredicted RBP12.46□□□□□ -0.41
VPS50-201ENST00000251739 MYH4Q9Y623 1939 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 PRKAB2O43741 272 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 CHGBP05060 677 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 AKR1B1P15121 316 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 COG2Q14746 738 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 UBE3CQ15386 1083 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 C12orf60Q5U649 245 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 CLEC10AQ8IUN9 316 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 SHCBP1Q8NEM2 672 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 TRPV1Q8NER1 839 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 NPLOC4Q8TAT6 608 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 LPAR1Q92633 364 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 DYNLL2Q96FJ2 89 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 MOV10L1Q9BXT6 1211 aaKnown RBP12.45□□□□□ -0.42
VPS50-201ENST00000251739 ATP8A2Q9NTI2 1148 aa12.45□□□□□ -0.42
VPS50-201ENST00000251739 CYBAP13498 195 aa12.44□□□□□ -0.42
VPS50-201ENST00000251739 MAGEA10P43363 369 aaPredicted RBP12.44□□□□□ -0.42
VPS50-201ENST00000251739 CAMK2BQ13554 666 aa12.44□□□□□ -0.42
VPS50-201ENST00000251739 LRRC26Q2I0M4 334 aa12.44□□□□□ -0.42
VPS50-201ENST00000251739 C16orf86Q6ZW13 317 aa12.44□□□□□ -0.42
VPS50-201ENST00000251739 MB21D1Q8N884 522 aa12.44□□□□□ -0.42
VPS50-201ENST00000251739 LRCH3Q96II8 777 aa12.44□□□□□ -0.42
VPS50-201ENST00000251739 SPATC1LQ9H0A9 340 aa12.44□□□□□ -0.42
VPS50-201ENST00000251739 BOLA2Q9H3K6 86 aa12.44□□□□□ -0.42
VPS50-201ENST00000251739 VCPKMTQ9H867 229 aa12.44□□□□□ -0.42
VPS50-201ENST00000251739 RCAN3Q9UKA8 241 aa12.44□□□□□ -0.42
VPS50-201ENST00000251739 TMX2Q9Y320 296 aa12.44□□□□□ -0.42
VPS50-201ENST00000251739 IVNS1ABPQ9Y6Y0 642 aa12.44□□□□□ -0.42
VPS50-201ENST00000251739 CYP2D7A0A087X1C5 515 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 MPHOSPH10O00566 681 aaKnown RBP12.43□□□□□ -0.42
VPS50-201ENST00000251739 MSCO60682 206 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 SYN1P17600 705 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 ICA1Q05084 483 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 LRIT3Q3SXY7 679 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 C20orf194Q5TEA3 1177 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 MFSD14CQ5VZR4 134 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 OLFML2BQ68BL8 750 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 GPR153Q6NV75 609 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 CCDC17Q96LX7 622 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 TANGO6Q9C0B7 1094 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.43□□□□□ -0.42
VPS50-201ENST00000251739 CHMP4BQ9H444 224 aaKnown RBP12.43□□□□□ -0.42
VPS50-201ENST00000251739 HOXC10Q9NYD6 342 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 DDX20Q9UHI6 824 aaKnown RBP12.43□□□□□ -0.42
VPS50-201ENST00000251739 ROBO3Q96MS0 1386 aa12.43□□□□□ -0.42
VPS50-201ENST00000251739 USP17L12C9JPN9 530 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 USP17L21D6R901 530 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 WDR46O15213 610 aaKnown RBP12.42□□□□□ -0.42
VPS50-201ENST00000251739 STRNO43815 780 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 ERCC3P19447 782 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 ADORA2AP29274 412 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 CYP2C19P33261 490 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 CDK8P49336 464 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 WDR78Q5VTH9 848 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 ABRAQ8N0Z2 381 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 ATG4CQ96DT6 458 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 LRRCC1Q9C099 1032 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 PUS7LQ9H0K6 701 aaKnown RBP12.42□□□□□ -0.42
VPS50-201ENST00000251739 SH2D4AQ9H788 454 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 ARHGEF10LQ9HCE6 1279 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 CWC22Q9HCG8 908 aaKnown RBP12.42□□□□□ -0.42
VPS50-201ENST00000251739 ADAMTS5Q9UNA0 930 aa12.42□□□□□ -0.42
VPS50-201ENST00000251739 COBLO75128 1261 aa12.41□□□□□ -0.42
VPS50-201ENST00000251739 HOXB3P14651 431 aaPredicted RBP12.41□□□□□ -0.42
VPS50-201ENST00000251739 ATP2B2Q01814 1243 aa12.41□□□□□ -0.42
VPS50-201ENST00000251739 E2F4Q16254 413 aa12.41□□□□□ -0.42
VPS50-201ENST00000251739 CTR9Q6PD62 1173 aa12.41□□□□□ -0.42
VPS50-201ENST00000251739 TDHQ8IZJ6 230 aa12.41□□□□□ -0.42
VPS50-201ENST00000251739 SPICE1Q8N0Z3 855 aa12.41□□□□□ -0.42
VPS50-201ENST00000251739 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS50-201ENST00000251739 MROH8Q9H579 483 aa12.41□□□□□ -0.42
VPS50-201ENST00000251739 MCM3APO60318 1980 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms