RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W PAM1P37304 830 aaKnown RBP8.08□□□□□ -1.12
UFD1YGR048W CCL1P37366 393 aa8.08□□□□□ -1.12
UFD1YGR048W KTR4P38131 464 aa8.08□□□□□ -1.12
UFD1YGR048W SOH1P38633 127 aa8.08□□□□□ -1.12
UFD1YGR048W HIS2P38635 335 aa8.08□□□□□ -1.12
UFD1YGR048W KEL1P38853 1164 aaKnown RBP8.08□□□□□ -1.12
UFD1YGR048W HAL5P38970 855 aaKnown RBP8.08□□□□□ -1.12
UFD1YGR048W BFA1P47113 574 aa8.08□□□□□ -1.12
UFD1YGR048W COS5P47187 383 aa8.08□□□□□ -1.12
UFD1YGR048W EFM5P53200 248 aaKnown RBP8.08□□□□□ -1.12
UFD1YGR048W NOP19P53317 196 aaPredicted RBP8.08□□□□□ -1.12
UFD1YGR048W KTR5P53966 522 aaPredicted RBP8.08□□□□□ -1.12
UFD1YGR048W SDH1Q00711 640 aa8.08□□□□□ -1.12
UFD1YGR048W NAN1Q02931 896 aaKnown RBP8.08□□□□□ -1.12
UFD1YGR048W FDC1Q03034 503 aa8.08□□□□□ -1.12
UFD1YGR048W COS7Q07788 383 aa8.08□□□□□ -1.12
UFD1YGR048W NGL1Q08213 363 aaKnown RBP8.08□□□□□ -1.12
UFD1YGR048W TY1A-BLQ12266 440 aa8.08□□□□□ -1.12
UFD1YGR048W YHR213W-AQ8TGT4 77 aa8.08□□□□□ -1.12
UFD1YGR048W KAR4P25583 335 aa8.07□□□□□ -1.12
UFD1YGR048W PMT2P31382 759 aa8.07□□□□□ -1.12
UFD1YGR048W CCR4P31384 837 aaKnown RBP8.07□□□□□ -1.12
UFD1YGR048W CYS4P32582 507 aaKnown RBP8.07□□□□□ -1.12
UFD1YGR048W MRS6P32864 603 aaKnown RBP8.07□□□□□ -1.12
UFD1YGR048W AFR1P33304 620 aa8.07□□□□□ -1.12
UFD1YGR048W KTR2P33550 425 aa8.07□□□□□ -1.12
UFD1YGR048W PXA2P34230 853 aa8.07□□□□□ -1.12
UFD1YGR048W YHR219WP38900 624 aa8.07□□□□□ -1.12
UFD1YGR048W KRE29P40026 464 aa8.07□□□□□ -1.12
UFD1YGR048W YJR061WP40355 935 aa8.07□□□□□ -1.12
UFD1YGR048W YJL107CP42947 387 aa8.07□□□□□ -1.12
UFD1YGR048W TOS3P43637 560 aa8.07□□□□□ -1.12
UFD1YGR048W LSM8P47093 109 aaKnown RBP8.07□□□□□ -1.12
UFD1YGR048W YGR153WP48238 217 aa8.07□□□□□ -1.12
UFD1YGR048W YGL138CP53122 345 aa8.07□□□□□ -1.12
UFD1YGR048W CAF40P53829 373 aa8.07□□□□□ -1.12
UFD1YGR048W DMA2P53924 522 aa8.07□□□□□ -1.12
UFD1YGR048W RPN9Q04062 393 aaKnown RBP8.07□□□□□ -1.12
UFD1YGR048W YDR278CQ05612 105 aa8.07□□□□□ -1.12
UFD1YGR048W PUF3Q07807 879 aaKnown RBP RIP-Chip data8.07□□□□□ -1.12not detected
UFD1YGR048W MCD1Q12158 566 aa8.07□□□□□ -1.12
UFD1YGR048W DPH6Q12429 685 aa8.07□□□□□ -1.12
UFD1YGR048W AVL9Q12500 764 aa8.07□□□□□ -1.12
UFD1YGR048W DCP1Q12517 231 aaPredicted RBP8.07□□□□□ -1.12
UFD1YGR048W TIF1P10081 395 aaKnown RBP8.06□□□□□ -1.12
UFD1YGR048W GAL3P13045 520 aa8.06□□□□□ -1.12
UFD1YGR048W SGV1P23293 657 aaKnown RBP8.06□□□□□ -1.12
UFD1YGR048W SPR1P32603 445 aa8.06□□□□□ -1.12
UFD1YGR048W PEX6P33760 1030 aa8.06□□□□□ -1.12
UFD1YGR048W WHI3P34761 661 aaKnown RBP8.06□□□□□ -1.12
UFD1YGR048W POP4P38336 279 aa8.06□□□□□ -1.12
UFD1YGR048W YHR078WP38799 552 aa8.06□□□□□ -1.12
UFD1YGR048W YDR089WP38966 869 aa8.06□□□□□ -1.12
UFD1YGR048W STT3P39007 718 aaKnown RBP8.06□□□□□ -1.12
UFD1YGR048W UBP5P39944 805 aa8.06□□□□□ -1.12
UFD1YGR048W YER034WP40022 185 aaKnown RBP8.06□□□□□ -1.12
UFD1YGR048W YIL077CP40508 320 aa8.06□□□□□ -1.12
UFD1YGR048W YRB2P40517 327 aa8.06□□□□□ -1.12
UFD1YGR048W MNT3P40549 630 aa8.06□□□□□ -1.12
UFD1YGR048W GUS1P46655 708 aaKnown RBP RIP-Chip data8.06□□□□□ -1.12not detected
UFD1YGR048W CWC23P52868 283 aaPredicted RBP8.06□□□□□ -1.12
UFD1YGR048W COG5P53951 403 aa8.06□□□□□ -1.12
UFD1YGR048W HDA1P53973 706 aa8.06□□□□□ -1.12
UFD1YGR048W RRP17Q04031 235 aaPredicted RBP8.06□□□□□ -1.12
UFD1YGR048W YLL007CQ07799 665 aa8.06□□□□□ -1.12
UFD1YGR048W YPL191CQ08930 360 aa8.06□□□□□ -1.12
UFD1YGR048W PSY3Q12318 242 aa8.06□□□□□ -1.12
UFD1YGR048W GPM3Q12326 303 aa8.06□□□□□ -1.12
UFD1YGR048W MET6P05694 767 aaKnown RBP8.05□□□□□ -1.12
UFD1YGR048W TPK2P06245 380 aa8.05□□□□□ -1.12
UFD1YGR048W RHO1P06780 209 aaKnown RBP8.05□□□□□ -1.12
UFD1YGR048W ADE5,7P07244 802 aaKnown RBP8.05□□□□□ -1.12
UFD1YGR048W DSF1P0CX08 502 aa8.05□□□□□ -1.12
UFD1YGR048W YNR073CP0CX09 502 aa8.05□□□□□ -1.12
UFD1YGR048W COQ1P18900 473 aa8.05□□□□□ -1.12
UFD1YGR048W KGD1P20967 1014 aaKnown RBP8.05□□□□□ -1.12
UFD1YGR048W DIT1P21623 536 aa8.05□□□□□ -1.12
UFD1YGR048W RNR3P21672 869 aaKnown RBP8.05□□□□□ -1.12
UFD1YGR048W CTR86P25355 563 aa8.05□□□□□ -1.12
UFD1YGR048W ASF2P32448 525 aaPredicted RBP8.05□□□□□ -1.12
UFD1YGR048W PPQ1P32945 549 aa8.05□□□□□ -1.12
UFD1YGR048W RIM4P38741 713 aa8.05□□□□□ -1.12
UFD1YGR048W YMR134WP40207 237 aa8.05□□□□□ -1.12
UFD1YGR048W VHR1P40522 640 aa8.05□□□□□ -1.12
UFD1YGR048W RPL34BP40525 121 aaKnown RBP8.05□□□□□ -1.12
UFD1YGR048W COS4P43542 379 aa8.05□□□□□ -1.12
UFD1YGR048W YFR018CP43599 363 aa8.05□□□□□ -1.12
UFD1YGR048W LSM1P47017 172 aaKnown RBP8.05□□□□□ -1.12
UFD1YGR048W TWF1P53250 332 aa8.05□□□□□ -1.12
UFD1YGR048W COS1P53822 381 aa8.05□□□□□ -1.12
UFD1YGR048W MPS1P54199 764 aa8.05□□□□□ -1.12
UFD1YGR048W PET117Q02771 107 aa8.05□□□□□ -1.12
UFD1YGR048W UBP16Q02863 499 aa8.05□□□□□ -1.12
UFD1YGR048W YDR249CQ03787 373 aa8.05□□□□□ -1.12
UFD1YGR048W BNA7Q04066 261 aa8.05□□□□□ -1.12
UFD1YGR048W YLR297WQ05899 129 aa8.05□□□□□ -1.12
UFD1YGR048W IWR1Q07532 353 aaPredicted RBP8.05□□□□□ -1.12
UFD1YGR048W LOT6Q07923 191 aa8.05□□□□□ -1.12
UFD1YGR048W FEX2Q08991 375 aa8.05□□□□□ -1.12
UFD1YGR048W TUF1P02992 437 aaKnown RBP8.04□□□□□ -1.12
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms