RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W HER2Q03557 464 aa3.29□□□□□ -1.88
USE1YGL098W RPN9Q04062 393 aaKnown RBP3.29□□□□□ -1.88
USE1YGL098W YMR027WQ04371 470 aa3.29□□□□□ -1.88
USE1YGL098W UTP14Q04500 899 aaKnown RBP3.29□□□□□ -1.88
USE1YGL098W GAL83Q04739 417 aa3.29□□□□□ -1.88
USE1YGL098W SPC2Q04969 178 aa3.29□□□□□ -1.88
USE1YGL098W SPO77Q06134 477 aa3.29□□□□□ -1.88
USE1YGL098W TDA5Q06417 326 aaKnown RBP3.29□□□□□ -1.88
USE1YGL098W CRN1Q06440 651 aa3.29□□□□□ -1.88
USE1YGL098W COS7Q07788 383 aa3.29□□□□□ -1.88
USE1YGL098W DIS3Q08162 1001 aaKnown RBP3.29□□□□□ -1.88
USE1YGL098W GAS5Q08193 484 aa3.29□□□□□ -1.88
USE1YGL098W PEX15Q08215 383 aa3.29□□□□□ -1.88
USE1YGL098W DIA2Q08496 732 aaPredicted RBP3.29□□□□□ -1.88
USE1YGL098W MCH5Q08777 521 aa3.29□□□□□ -1.88
USE1YGL098W YPR202WQ08993 238 aa3.29□□□□□ -1.88
USE1YGL098W MCD1Q12158 566 aa3.29□□□□□ -1.88
USE1YGL098W STB3Q12427 513 aa3.29□□□□□ -1.88
USE1YGL098W FMP16Q12497 93 aa3.29□□□□□ -1.88
USE1YGL098W Q0182Q9ZZW1 134 aa3.29□□□□□ -1.88
USE1YGL098W YRF1-2P40105 1681 aa3.29□□□□□ -1.88
USE1YGL098W APC1P53886 1748 aa3.28□□□□□ -1.88
USE1YGL098W PAB1P04147 577 aaKnown RBP RIP-Chip data3.28□□□□□ -1.88not detected
USE1YGL098W TUB1P09733 447 aaKnown RBP3.28□□□□□ -1.88
USE1YGL098W ALG1P16661 449 aa3.28□□□□□ -1.88
USE1YGL098W SAR1P20606 190 aaKnown RBP3.28□□□□□ -1.88
USE1YGL098W VPS34P22543 875 aa3.28□□□□□ -1.88
USE1YGL098W SNT1P25357 1226 aa3.28□□□□□ -1.88
USE1YGL098W RAD14P28519 371 aa3.28□□□□□ -1.88
USE1YGL098W ITR1P30605 584 aa3.28□□□□□ -1.88
USE1YGL098W ASF2P32448 525 aaPredicted RBP3.28□□□□□ -1.88
USE1YGL098W NUP2P32499 720 aa3.28□□□□□ -1.88
USE1YGL098W SRP101P32916 621 aa3.28□□□□□ -1.88
USE1YGL098W WHI3P34761 661 aaKnown RBP3.28□□□□□ -1.88
USE1YGL098W RER2P35196 286 aa3.28□□□□□ -1.88
USE1YGL098W YKL050CP35736 922 aa3.28□□□□□ -1.88
USE1YGL098W MAE1P36013 669 aaKnown RBP3.28□□□□□ -1.88
USE1YGL098W PDX3P38075 228 aaKnown RBP3.28□□□□□ -1.88
USE1YGL098W RDH54P38086 958 aa3.28□□□□□ -1.88
USE1YGL098W CDS1P38221 457 aa3.28□□□□□ -1.88
USE1YGL098W VHC1P38329 1120 aa3.28□□□□□ -1.88
USE1YGL098W YHL050CP38721 697 aa3.28□□□□□ -1.88
USE1YGL098W YDR089WP38966 869 aa3.28□□□□□ -1.88
USE1YGL098W MNN9P39107 395 aaKnown RBP3.28□□□□□ -1.88
USE1YGL098W FAA2P39518 744 aa3.28□□□□□ -1.88
USE1YGL098W GDH3P39708 457 aa3.28□□□□□ -1.88
USE1YGL098W RTT105P40063 208 aa3.28□□□□□ -1.88
USE1YGL098W LCP5P40079 357 aaPredicted RBP3.28□□□□□ -1.88
USE1YGL098W HXT8P40886 569 aa3.28□□□□□ -1.88
USE1YGL098W MMM1P41800 426 aa3.28□□□□□ -1.88
USE1YGL098W DAK2P43550 591 aa3.28□□□□□ -1.88
USE1YGL098W GUS1P46655 708 aaKnown RBP RIP-Chip data3.28□□□□□ -1.88not detected
USE1YGL098W DIE2P50076 525 aa3.28□□□□□ -1.88
USE1YGL098W NAS6P50086 228 aa3.28□□□□□ -1.88
USE1YGL098W PIP2P52960 996 aa3.28□□□□□ -1.88
USE1YGL098W ARO8P53090 500 aaKnown RBP3.28□□□□□ -1.88
USE1YGL098W BSC5P53755 489 aa3.28□□□□□ -1.88
USE1YGL098W CWC24P53769 259 aa3.28□□□□□ -1.88
USE1YGL098W GOR1P53839 350 aa3.28□□□□□ -1.88
USE1YGL098W KTR5P53966 522 aaPredicted RBP3.28□□□□□ -1.88
USE1YGL098W MRPL13Q02204 264 aa3.28□□□□□ -1.88
USE1YGL098W FOX2Q02207 900 aaKnown RBP3.28□□□□□ -1.88
USE1YGL098W RMI1Q02685 241 aa3.28□□□□□ -1.88
USE1YGL098W SKI8Q02793 397 aaPredicted RBP3.28□□□□□ -1.88
USE1YGL098W SRP1Q02821 542 aaKnown RBP3.28□□□□□ -1.88
USE1YGL098W RSC9Q03124 581 aa3.28□□□□□ -1.88
USE1YGL098W SSY1Q03770 852 aa3.28□□□□□ -1.88
USE1YGL098W ARX1Q03862 593 aaKnown RBP3.28□□□□□ -1.88
USE1YGL098W ARV1Q06541 321 aa3.28□□□□□ -1.88
USE1YGL098W SUB2Q07478 446 aaKnown RBP3.28□□□□□ -1.88
USE1YGL098W YPD1Q07688 167 aa3.28□□□□□ -1.88
USE1YGL098W YLL007CQ07799 665 aa3.28□□□□□ -1.88
USE1YGL098W PUF3Q07807 879 aaKnown RBP RIP-Chip data3.28□□□□□ -1.88not detected
USE1YGL098W PGC1Q08959 321 aa3.28□□□□□ -1.88
USE1YGL098W TY3A-GQ12173 290 aa3.28□□□□□ -1.88
USE1YGL098W LDB17Q12342 491 aa3.28□□□□□ -1.88
USE1YGL098W SPE4Q12455 300 aa3.28□□□□□ -1.88
USE1YGL098W PTC5Q12511 572 aa3.28□□□□□ -1.88
USE1YGL098W CMC2Q3E7A4 109 aa3.28□□□□□ -1.88
USE1YGL098W YBR298C-AQ8TGK4 73 aa3.28□□□□□ -1.88
USE1YGL098W YHR213W-AQ8TGT4 77 aa3.28□□□□□ -1.88
USE1YGL098W TY3A-IQ99219 290 aa3.28□□□□□ -1.88
USE1YGL098W RPS17AP02407 136 aaKnown RBP3.27□□□□□ -1.89
USE1YGL098W URA3P03962 267 aa3.27□□□□□ -1.89
USE1YGL098W THS1P04801 734 aaKnown RBP3.27□□□□□ -1.89
USE1YGL098W SCP160P06105 1222 aaKnown RBP RIP-Chip data3.27□□□□□ -1.89not detected
USE1YGL098W ADE5,7P07244 802 aaKnown RBP3.27□□□□□ -1.89
USE1YGL098W DSF1P0CX08 502 aa3.27□□□□□ -1.89
USE1YGL098W YNR073CP0CX09 502 aa3.27□□□□□ -1.89
USE1YGL098W RAP1P11938 827 aa3.27□□□□□ -1.89
USE1YGL098W SNF4P12904 322 aa3.27□□□□□ -1.89
USE1YGL098W GLN4P13188 809 aaKnown RBP3.27□□□□□ -1.89
USE1YGL098W RPS17BP14127 136 aaKnown RBP3.27□□□□□ -1.89
USE1YGL098W FBA1P14540 359 aaKnown RBP3.27□□□□□ -1.89
USE1YGL098W HNM1P19807 563 aa3.27□□□□□ -1.89
USE1YGL098W DBP2P24783 546 aaKnown RBP3.27□□□□□ -1.89
USE1YGL098W YSP3P25036 478 aa3.27□□□□□ -1.89
USE1YGL098W RRT12P25381 491 aa3.27□□□□□ -1.89
USE1YGL098W KAR4P25583 335 aa3.27□□□□□ -1.89
USE1YGL098W PWP2P25635 923 aaKnown RBP3.27□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 21.1 ms