RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	MTC7	P32633	139 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	YSC83	P32792	385 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	TRM2	P33753	639 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	VPS24	P36095	224 aa	Known RBP	4.53	□□□□□ -1.68
UBC8	YEL012W	AGP2	P38090	596 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	YBR053C	P38235	358 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	GIP4	P39732	760 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	IES5	P40060	125 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	HOS4	P40480	1083 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	BAP3	P41815	604 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	ASN1	P49089	572 aa	Known RBP	4.53	□□□□□ -1.68
UBC8	YEL012W	CTF18	P49956	741 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	MNN10	P50108	393 aa	Known RBP	4.53	□□□□□ -1.68
UBC8	YEL012W	MTL1	P53214	551 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	SEC5	P89102	971 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	CLU1	Q03690	1277 aa	Known RBP	4.53	□□□□□ -1.68
UBC8	YEL012W	MLC2	Q06580	163 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	SDH5	Q08230	162 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	HFA1	P32874	2273 aa		4.53	□□□□□ -1.68
UBC8	YEL012W	YLR358C	O13565	187 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	KGD2	P19262	463 aa	Predicted RBP	4.52	□□□□□ -1.69
UBC8	YEL012W	CBP3	P21560	335 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	PPH22	P23595	377 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	PTP2	P29461	750 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	SWE1	P32944	819 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	PPS1	P38148	807 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	FUI1	P38196	639 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	SRP68	P38687	599 aa	Known RBP	4.52	□□□□□ -1.69
UBC8	YEL012W	FMO1	P38866	432 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	DUN1	P39009	513 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	CHS6	P40955	746 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	RMD8	P43620	662 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.52	□□□□□ -1.69	not detected
UBC8	YEL012W	FYV8	P46949	817 aa	Known RBP	4.52	□□□□□ -1.69
UBC8	YEL012W	BIT61	P47041	543 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	PUS4	P48567	403 aa	Known RBP	4.52	□□□□□ -1.69
UBC8	YEL012W	UBA2	P52488	636 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	UBX4	P54730	416 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	MTD1	Q02046	320 aa	Known RBP	4.52	□□□□□ -1.69
UBC8	YEL012W	GAD1	Q04792	585 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	BSP1	Q06604	576 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	CWC2	Q12046	339 aa	Predicted RBP	4.52	□□□□□ -1.69
UBC8	YEL012W	ECM3	Q99252	613 aa		4.52	□□□□□ -1.69
UBC8	YEL012W	MEC1	P38111	2368 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	TPK1	P06244	397 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	ASP3-2	P0CX77	362 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	ASP3-3	P0CX78	362 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	ASP3-4	P0CX79	362 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	ASP3-1	P0CZ17	362 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	PCK1	P10963	549 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	PGI1	P12709	554 aa	Known RBP	4.51	□□□□□ -1.69
UBC8	YEL012W	ALG1	P16661	449 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	ISY1	P21374	235 aa	Predicted RBP	4.51	□□□□□ -1.69
UBC8	YEL012W	VPS3	P23643	1011 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	RAD16	P31244	790 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	TCD2	P36101	447 aa	Known RBP	4.51	□□□□□ -1.69
UBC8	YEL012W	APT2	P36973	181 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	TAF1	P46677	1066 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	MUP1	P50276	574 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	NMA2	P53204	395 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	PRM6	Q04705	352 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	RRP6	Q12149	733 aa	Known RBP	4.51	□□□□□ -1.69
UBC8	YEL012W	NBL1	Q3E7Y6	73 aa		4.51	□□□□□ -1.69
UBC8	YEL012W	CET1	O13297	549 aa	Predicted RBP	4.5	□□□□□ -1.69
UBC8	YEL012W	MSS18	P08593	268 aa		4.5	□□□□□ -1.69
UBC8	YEL012W	LAT1	P12695	482 aa	Known RBP	4.5	□□□□□ -1.69
UBC8	YEL012W	HOP1	P20050	605 aa		4.5	□□□□□ -1.69
UBC8	YEL012W	YHR054C	P38780	354 aa		4.5	□□□□□ -1.69
UBC8	YEL012W	QRI7	P43122	407 aa		4.5	□□□□□ -1.69
UBC8	YEL012W	HSH155	P49955	971 aa	Known RBP	4.5	□□□□□ -1.69
UBC8	YEL012W	TAF4	P50105	388 aa		4.5	□□□□□ -1.69
UBC8	YEL012W	PSP1	P50896	841 aa	Known RBP	4.5	□□□□□ -1.69
UBC8	YEL012W	COX18	P53239	316 aa		4.5	□□□□□ -1.69
UBC8	YEL012W	HOL1	P53389	586 aa		4.5	□□□□□ -1.69
UBC8	YEL012W	RTK1	Q12100	620 aa	Predicted RBP	4.5	□□□□□ -1.69
UBC8	YEL012W	NDJ1	Q12366	352 aa		4.5	□□□□□ -1.69
UBC8	YEL012W	APA1	P16550	321 aa	Known RBP	4.49	□□□□□ -1.69
UBC8	YEL012W	CTS1	P29029	562 aa		4.49	□□□□□ -1.69
UBC8	YEL012W	PRE4	P30657	266 aa		4.49	□□□□□ -1.69
UBC8	YEL012W	DGR2	P32330	852 aa		4.49	□□□□□ -1.69
UBC8	YEL012W	CDS1	P38221	457 aa		4.49	□□□□□ -1.69
UBC8	YEL012W	YHL041W	P38730	149 aa		4.49	□□□□□ -1.69
UBC8	YEL012W	YPT35	P38815	214 aa	Known RBP	4.49	□□□□□ -1.69
UBC8	YEL012W	HIS6	P40545	261 aa		4.49	□□□□□ -1.69
UBC8	YEL012W	MAD2	P40958	196 aa		4.49	□□□□□ -1.69
UBC8	YEL012W	PHO23	P50947	330 aa		4.49	□□□□□ -1.69
UBC8	YEL012W	YPL216W	Q08964	1102 aa		4.49	□□□□□ -1.69
UBC8	YEL012W	SPE3	Q12074	293 aa	Known RBP	4.49	□□□□□ -1.69
UBC8	YEL012W	ERG20	P08524	352 aa	Known RBP	4.48	□□□□□ -1.69
UBC8	YEL012W	PHO3	P24031	467 aa		4.48	□□□□□ -1.69
UBC8	YEL012W	GPI10	P30777	616 aa		4.48	□□□□□ -1.69
UBC8	YEL012W	UBP13	P38187	747 aa		4.48	□□□□□ -1.69
UBC8	YEL012W	YHL017W	P38745	532 aa		4.48	□□□□□ -1.69
UBC8	YEL012W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.48	□□□□□ -1.69	not detected
UBC8	YEL012W	STL1	P39932	569 aa		4.48	□□□□□ -1.69
UBC8	YEL012W	ELO3	P40319	345 aa		4.48	□□□□□ -1.69
UBC8	YEL012W	PRM2	P40534	656 aa		4.48	□□□□□ -1.69
UBC8	YEL012W	PXA1	P41909	870 aa		4.48	□□□□□ -1.69
UBC8	YEL012W	VPS25	P47142	202 aa		4.48	□□□□□ -1.69
UBC8	YEL012W	AMA1	P50082	593 aa		4.48	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 136.7 ms