RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W ATG21Q02887 496 aa2.17□□□□□ -2.06
SIR4YDR227W NHX1Q04121 633 aa2.17□□□□□ -2.06
SIR4YDR227W VPS74Q06385 345 aa2.17□□□□□ -2.06
SIR4YDR227W ATG33Q06485 197 aa2.17□□□□□ -2.06
SIR4YDR227W WTM2Q12206 467 aa2.17□□□□□ -2.06
SIR4YDR227W NOP58Q12499 511 aaKnown RBP2.17□□□□□ -2.06
SIR4YDR227W OM45P16547 393 aa2.17□□□□□ -2.06
SIR4YDR227W SPS22P25380 463 aa2.17□□□□□ -2.06
SIR4YDR227W CDC15P27636 974 aa2.17□□□□□ -2.06
SIR4YDR227W COY1P34237 679 aa2.17□□□□□ -2.06
SIR4YDR227W PIH1P38768 344 aa2.17□□□□□ -2.06
SIR4YDR227W DYS1P38791 387 aa2.17□□□□□ -2.06
SIR4YDR227W YTA12P40341 825 aa2.17□□□□□ -2.06
SIR4YDR227W PRP31P49704 494 aaPredicted RBP2.17□□□□□ -2.06
SIR4YDR227W AQR1P53943 586 aa2.17□□□□□ -2.06
SIR4YDR227W RSM28Q03430 361 aa2.17□□□□□ -2.06
SIR4YDR227W MUS81Q04149 632 aaPredicted RBP2.17□□□□□ -2.06
SIR4YDR227W ATG26Q06321 1198 aa2.17□□□□□ -2.06
SIR4YDR227W HDA2Q06629 674 aa2.17□□□□□ -2.06
SIR4YDR227W YPR089WO13585 888 aa2.17□□□□□ -2.06
SIR4YDR227W IPP1P00817 287 aaKnown RBP2.17□□□□□ -2.06
SIR4YDR227W CBS1P14066 229 aa2.17□□□□□ -2.06
SIR4YDR227W CKA2P19454 339 aa2.17□□□□□ -2.06
SIR4YDR227W MIH1P23748 554 aa2.17□□□□□ -2.06
SIR4YDR227W GAR1P28007 205 aaKnown RBP2.17□□□□□ -2.06
SIR4YDR227W SUA5P32579 426 aa2.17□□□□□ -2.06
SIR4YDR227W SOL2P37262 315 aa2.17□□□□□ -2.06
SIR4YDR227W YBR062CP38239 180 aa2.17□□□□□ -2.06
SIR4YDR227W SIF2P38262 535 aa2.17□□□□□ -2.06
SIR4YDR227W EMP65P40085 556 aa2.17□□□□□ -2.06
SIR4YDR227W TOK1P40310 691 aa2.17□□□□□ -2.06
SIR4YDR227W YJL118WP47022 219 aa2.17□□□□□ -2.06
SIR4YDR227W MLC1P53141 149 aa2.17□□□□□ -2.06
SIR4YDR227W IPI3P53877 555 aa2.17□□□□□ -2.06
SIR4YDR227W MRI1Q06489 411 aaKnown RBP2.17□□□□□ -2.06
SIR4YDR227W OPY2Q06810 360 aa2.17□□□□□ -2.06
SIR4YDR227W YPL277CQ08989 487 aa2.17□□□□□ -2.06
SIR4YDR227W RUD3Q12234 484 aaKnown RBP2.17□□□□□ -2.06
SIR4YDR227W YLL054CQ12244 843 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-DR4O74302 440 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-HP0C2I4 478 aaKnown RBP2.17□□□□□ -2.06
SIR4YDR227W TY1A-AP0CX57 440 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-PR1P0CX58 440 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-ORP0CX59 440 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-PR2P0CX60 440 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-DR5P0CX65 440 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-ER2P0CX66 440 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-GR3P0CX67 440 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-LR1P0CX68 440 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-MR2P0CX69 440 aa2.17□□□□□ -2.06
SIR4YDR227W POX1P13711 748 aa2.17□□□□□ -2.06
SIR4YDR227W PRP22P24384 1145 aaKnown RBP2.17□□□□□ -2.06
SIR4YDR227W YCL002CP25565 263 aa2.17□□□□□ -2.06
SIR4YDR227W CBF2P32504 956 aa2.17□□□□□ -2.06
SIR4YDR227W YPT52P36018 234 aaKnown RBP2.17□□□□□ -2.06
SIR4YDR227W NUP133P36161 1157 aa2.17□□□□□ -2.06
SIR4YDR227W CCL1P37366 393 aa2.17□□□□□ -2.06
SIR4YDR227W FAD1P38913 306 aa2.17□□□□□ -2.06
SIR4YDR227W PNT1P38969 423 aa2.17□□□□□ -2.06
SIR4YDR227W LTP1P40347 161 aa2.17□□□□□ -2.06
SIR4YDR227W THI6P41835 540 aa2.17□□□□□ -2.06
SIR4YDR227W GZF3P42944 551 aaKnown RBP2.17□□□□□ -2.06
SIR4YDR227W TY1A-JR2P47099 440 aa2.17□□□□□ -2.06
SIR4YDR227W SHE10P53075 577 aa2.17□□□□□ -2.06
SIR4YDR227W COG1P53079 417 aa2.17□□□□□ -2.06
SIR4YDR227W MSC2Q03455 724 aa2.17□□□□□ -2.06
SIR4YDR227W TRS130Q03660 1102 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-DR1Q03856 440 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-ML1Q04706 440 aaKnown RBP2.17□□□□□ -2.06
SIR4YDR227W PMT7Q06644 662 aa2.17□□□□□ -2.06
SIR4YDR227W PEX15Q08215 383 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-BRQ12217 440 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-NL2Q12470 440 aa2.17□□□□□ -2.06
SIR4YDR227W TY1A-GR2Q12485 440 aa2.17□□□□□ -2.06
SIR4YDR227W COX3P00420 269 aa2.16□□□□□ -2.06
SIR4YDR227W RPS24AP0CX31 135 aaKnown RBP2.16□□□□□ -2.06
SIR4YDR227W RPS24BP0CX32 135 aaKnown RBP2.16□□□□□ -2.06
SIR4YDR227W RPB8P20436 146 aa2.16□□□□□ -2.06
SIR4YDR227W MET22P32179 357 aa2.16□□□□□ -2.06
SIR4YDR227W SPR1P32603 445 aa2.16□□□□□ -2.06
SIR4YDR227W NGR1P32831 672 aaKnown RBP2.16□□□□□ -2.06
SIR4YDR227W PEX18P38855 283 aa2.16□□□□□ -2.06
SIR4YDR227W MNL1P38888 796 aa2.16□□□□□ -2.06
SIR4YDR227W SEC24P40482 926 aaKnown RBP2.16□□□□□ -2.06
SIR4YDR227W VID28P40547 921 aa2.16□□□□□ -2.06
SIR4YDR227W BNA6P43619 295 aa2.16□□□□□ -2.06
SIR4YDR227W YJR039WP47107 1121 aa2.16□□□□□ -2.06
SIR4YDR227W RPA14P50106 137 aa2.16□□□□□ -2.06
SIR4YDR227W ATC1Q04005 294 aa2.16□□□□□ -2.06
SIR4YDR227W SSQ1Q05931 657 aaPredicted RBP2.16□□□□□ -2.06
SIR4YDR227W BUR2Q05949 395 aa2.16□□□□□ -2.06
SIR4YDR227W RTK1Q12100 620 aaPredicted RBP2.16□□□□□ -2.06
SIR4YDR227W KCS1Q12494 1050 aa2.16□□□□□ -2.06
SIR4YDR227W ADE3P07245 946 aaKnown RBP2.16□□□□□ -2.06
SIR4YDR227W SRB4P32569 687 aa2.16□□□□□ -2.06
SIR4YDR227W PIN4P34217 668 aaKnown RBP RIP-Chip data2.16□□□□□ -2.06not detected
SIR4YDR227W APM2P38700 605 aa2.16□□□□□ -2.06
SIR4YDR227W DED81P38707 554 aaKnown RBP2.16□□□□□ -2.06
SIR4YDR227W SMC2P38989 1170 aaKnown RBP2.16□□□□□ -2.06
SIR4YDR227W RPS7BP48164 190 aaKnown RBP2.16□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 23.7 ms