RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SH2B1Q9NRF2 756 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 SLC12A6Q9UHW9 1150 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 DDNO94850 711 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 UPP2O95045 317 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 ANXA13P27216 316 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 PPP2R5AQ15172 486 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 SLC7A3Q8WY07 619 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 TSHZ2Q9NRE2 1034 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 FARP1Q9Y4F1 1045 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 ATP10DQ9P241 1426 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 SP3Q02447 781 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 SFSWAPQ12872 951 aaKnown RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 RASA3Q14644 834 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 ARMT1Q9H993 441 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 HEG1Q9ULI3 1381 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 GNASQ5JWF2 1037 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 FAM117BQ6P1L5 589 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 SESTD1Q86VW0 696 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 AMNQ9BXJ7 453 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 CAPN9O14815 690 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 LETM1O95202 739 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 ADCY7P51828 1080 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 ATN1P54259 1190 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 AAK1Q2M2I8 961 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 STRIP1Q5VSL9 837 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 SND1Q7KZF4 910 aaKnown RBP eCLIP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 FMNL3Q8IVF7 1028 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 ATG3Q9NT62 314 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 G3BP2Q9UN86 482 aaKnown RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 WDR33Q9C0J8 1336 aaKnown RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 SBNO2Q9Y2G9 1366 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 TTLL1O95922 423 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 ERO1BQ86YB8 467 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 GBP3Q9H0R5 595 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 SUGT1Q9Y2Z0 365 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 SETSIPP0DME0 302 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 TOP1P11387 765 aaKnown RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 TBC1D8BQ0IIM8 1120 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 KLHL10Q6JEL2 608 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 AGBL3Q8NEM8 1001 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 HERC5Q9UII4 1024 aaKnown RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 TPCN1Q9ULQ1 816 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 CEP170BQ9Y4F5 1589 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 NCOA3Q9Y6Q9 1424 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 TTC22Q5TAA0 569 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 TWF2Q6IBS0 349 aaKnown RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 KCNV1Q6PIU1 500 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 NLRP10Q86W26 655 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 SLC7A5P2Q9GIP4 190 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 FAM49AQ9H0Q0 323 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 ATP8A2Q9NTI2 1148 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 RMND1Q9NWS8 449 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 PA2G4Q9UQ80 394 aaKnown RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 C1orf167Q5SNV9 1468 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 ASXL1Q8IXJ9 1541 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 INO80B-WBP1J3KQ70 363 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 FIBPO43427 364 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 FOSP01100 380 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 KRT2P35908 639 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 RECQLP46063 649 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-218ENST00000640036 TMEM179Q6ZVK1 233 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 THEM5Q8N1Q8 247 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 CBFA2T2O43439 604 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 KIF11P52732 1056 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 APOBRQ0VD83 1088 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 STXBP2Q15833 593 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 CCDC6Q16204 474 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 CES5AQ6NT32 575 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 CEP112Q8N8E3 955 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 SYNDIG1Q9H7V2 258 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 MYOZ2Q9NPC6 264 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 ATP6V0A2Q9Y487 856 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 USH1CQ9Y6N9 552 aa5.61□□□□□ -1.51
SCN1A-218ENST00000640036 PLXNC1O60486 1568 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 RP1L1Q8IWN7 2480 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 NASPP49321 788 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 GUCY1B3Q02153 619 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 IFRD2Q12894 506 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 SPA17Q15506 151 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 OR6J1Q8NGC5 347 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 MAP3K20Q9NYL2 800 aaKnown RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 CPSF3Q9UKF6 684 aaKnown RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 DNM3Q9UQ16 869 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 NDUFB9Q9Y6M9 179 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 GSTTP1A0A1W2PQM5 241 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 TNNC2P02585 160 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 CCT6AP40227 531 aaKnown RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 PTPROQ16827 1216 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 LETM2Q2VYF4 491 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 POTEAQ6S8J7 498 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 COL23A1Q86Y22 540 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 GPC2Q8N158 579 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 EXOC6Q8TAG9 804 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 CAPNS2Q96L46 248 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 STARD7Q9NQZ5 370 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 EVA1BQ9NVM1 165 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 POLR3EQ9NVU0 708 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 SEPT10Q9P0V9 454 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 BCCIPQ9P287 314 aaKnown RBP eCLIP5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms