RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 LBX2Q6XYB7 198 aa18.21■□□□□ 0.51
SYNE2-228ENST00000639659 NCAPG2Q86XI2 1143 aa18.21■□□□□ 0.51
SYNE2-228ENST00000639659 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.21■□□□□ 0.51
SYNE2-228ENST00000639659 CRNKL1Q9BZJ0 848 aaKnown RBP18.21■□□□□ 0.51
SYNE2-228ENST00000639659 IL1RAPL2Q9NP60 686 aa18.21■□□□□ 0.51
SYNE2-228ENST00000639659 LTBP2Q14767 1821 aa18.21■□□□□ 0.51
SYNE2-228ENST00000639659 LAMA2P24043 3122 aaKnown RBP18.2■□□□□ 0.5
SYNE2-228ENST00000639659 ERCC3P19447 782 aa18.2■□□□□ 0.5
SYNE2-228ENST00000639659 CLEC10AQ8IUN9 316 aa18.2■□□□□ 0.5
SYNE2-228ENST00000639659 SLC44A5Q8NCS7 719 aa18.2■□□□□ 0.5
SYNE2-228ENST00000639659 ARRDC4Q8NCT1 418 aa18.2■□□□□ 0.5
SYNE2-228ENST00000639659 SDR42E1Q8WUS8 393 aa18.2■□□□□ 0.5
SYNE2-228ENST00000639659 FERMT2Q96AC1 680 aa18.2■□□□□ 0.5
SYNE2-228ENST00000639659 DNAJC2Q99543 621 aaKnown RBP18.2■□□□□ 0.5
SYNE2-228ENST00000639659 RIOK1Q9BRS2 568 aaKnown RBP18.2■□□□□ 0.5
SYNE2-228ENST00000639659 SPATC1LQ9H0A9 340 aa18.2■□□□□ 0.5
SYNE2-228ENST00000639659 A0A1W2PRG0 241 aa18.19■□□□□ 0.5
SYNE2-228ENST00000639659 CYP2D6P10635 497 aa18.19■□□□□ 0.5
SYNE2-228ENST00000639659 RLBP1P12271 317 aa18.19■□□□□ 0.5
SYNE2-228ENST00000639659 COG2Q14746 738 aa18.19■□□□□ 0.5
SYNE2-228ENST00000639659 TRIM60Q495X7 471 aa18.19■□□□□ 0.5
SYNE2-228ENST00000639659 PRAMEF19Q5SWL8 479 aa18.19■□□□□ 0.5
SYNE2-228ENST00000639659 SLC9C2Q5TAH2 1124 aa18.19■□□□□ 0.5
SYNE2-228ENST00000639659 SPICE1Q8N0Z3 855 aa18.19■□□□□ 0.5
SYNE2-228ENST00000639659 COL25A1Q9BXS0 654 aaPredicted RBP18.19■□□□□ 0.5
SYNE2-228ENST00000639659 MYH8P13535 1937 aa18.19■□□□□ 0.5
SYNE2-228ENST00000639659 UNC80Q8N2C7 3258 aa18.18■□□□□ 0.5
SYNE2-228ENST00000639659 CCER2I3L3R5 266 aa18.18■□□□□ 0.5
SYNE2-228ENST00000639659 FLOT1O75955 427 aa18.18■□□□□ 0.5
SYNE2-228ENST00000639659 PDE6AP16499 860 aa18.18■□□□□ 0.5
SYNE2-228ENST00000639659 SHHQ15465 462 aa18.18■□□□□ 0.5
SYNE2-228ENST00000639659 CEP85Q6P2H3 762 aa18.18■□□□□ 0.5
SYNE2-228ENST00000639659 SLC39A5Q6ZMH5 540 aa18.18■□□□□ 0.5
SYNE2-228ENST00000639659 ERC1Q8IUD2 1116 aa18.18■□□□□ 0.5
SYNE2-228ENST00000639659 HOXC10Q9NYD6 342 aa18.18■□□□□ 0.5
SYNE2-228ENST00000639659 ZNF236Q9UL36 1845 aa18.18■□□□□ 0.5
SYNE2-228ENST00000639659 ZNF532Q9HCE3 1301 aa18.18■□□□□ 0.5
SYNE2-228ENST00000639659 RLFQ13129 1914 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 POTEB2H3BUK9 544 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 GOLIM4O00461 696 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 RAD21O60216 631 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 COBLO75128 1261 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 ADCYAP1R1P41586 468 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 TTF1Q15361 905 aaPredicted RBP18.17■□□□□ 0.5
SYNE2-228ENST00000639659 KIAA1755Q5JYT7 1200 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 C9orf50Q5SZB4 431 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 OLFML2BQ68BL8 750 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 LCORLQ8N3X6 602 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 BADQ92934 168 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 ATG4CQ96DT6 458 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 DYNLL2Q96FJ2 89 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 SLC5A4Q9NY91 659 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 A0A0G2JMZ2 1700 aa18.17■□□□□ 0.5
SYNE2-228ENST00000639659 SEPT4O43236 478 aa18.16■□□□□ 0.5
SYNE2-228ENST00000639659 STRNO43815 780 aa18.16■□□□□ 0.5
SYNE2-228ENST00000639659 ICA1Q05084 483 aa18.16■□□□□ 0.5
SYNE2-228ENST00000639659 GABPAQ06546 454 aa18.16■□□□□ 0.5
SYNE2-228ENST00000639659 FAM47AQ5JRC9 791 aa18.16■□□□□ 0.5
SYNE2-228ENST00000639659 FAM109BQ6ICB4 259 aaPredicted RBP18.16■□□□□ 0.5
SYNE2-228ENST00000639659 TMEM179Q6ZVK1 233 aa18.16■□□□□ 0.5
SYNE2-228ENST00000639659 ARMT1Q9H993 441 aa18.16■□□□□ 0.5
SYNE2-228ENST00000639659 ARHGEF10LQ9HCE6 1279 aa18.16■□□□□ 0.5
SYNE2-228ENST00000639659 SHCBP1Q8NEM2 672 aa18.15■□□□□ 0.5
SYNE2-228ENST00000639659 DCP1AQ9NPI6 582 aaPredicted RBP18.15■□□□□ 0.5
SYNE2-228ENST00000639659 AKR1B1P15121 316 aa18.14■□□□□ 0.49
SYNE2-228ENST00000639659 DSG3P32926 999 aa18.14■□□□□ 0.49
SYNE2-228ENST00000639659 LRRC41Q15345 812 aa18.14■□□□□ 0.49
SYNE2-228ENST00000639659 SH3RF1Q7Z6J0 888 aa18.14■□□□□ 0.49
SYNE2-228ENST00000639659 MB21D1Q8N884 522 aa18.14■□□□□ 0.49
SYNE2-228ENST00000639659 CDX2Q99626 313 aaPredicted RBP18.14■□□□□ 0.49
SYNE2-228ENST00000639659 MROH8Q9H579 483 aa18.14■□□□□ 0.49
SYNE2-228ENST00000639659 SH2D4AQ9H788 454 aa18.14■□□□□ 0.49
SYNE2-228ENST00000639659 PDLIM7Q9NR12 457 aa18.14■□□□□ 0.49
SYNE2-228ENST00000639659 BAZ2AQ9UIF9 1905 aaKnown RBP18.13■□□□□ 0.49
SYNE2-228ENST00000639659 PRKAB2O43741 272 aa18.13■□□□□ 0.49
SYNE2-228ENST00000639659 MBD4O95243 580 aa18.13■□□□□ 0.49
SYNE2-228ENST00000639659 IFIT2P09913 472 aaKnown RBP18.13■□□□□ 0.49
SYNE2-228ENST00000639659 FCER1AP12319 257 aa18.13■□□□□ 0.49
SYNE2-228ENST00000639659 TMED8Q6PL24 325 aaPredicted RBP18.13■□□□□ 0.49
SYNE2-228ENST00000639659 MAFAQ8NHW3 353 aaPredicted RBP18.13■□□□□ 0.49
SYNE2-228ENST00000639659 RHPN1Q8TCX5 695 aa18.13■□□□□ 0.49
SYNE2-228ENST00000639659 PANK1Q8TE04 598 aa18.13■□□□□ 0.49
SYNE2-228ENST00000639659 MYLIPQ8WY64 445 aa18.13■□□□□ 0.49
SYNE2-228ENST00000639659 MAML3Q96JK9 1138 aa18.13■□□□□ 0.49
SYNE2-228ENST00000639659 MMP19Q99542 508 aa18.13■□□□□ 0.49
SYNE2-228ENST00000639659 COL11A1P12107 1806 aaPredicted RBP18.12■□□□□ 0.49
SYNE2-228ENST00000639659 CYP2D7A0A087X1C5 515 aa18.12■□□□□ 0.49
SYNE2-228ENST00000639659 PGK2P07205 417 aa18.12■□□□□ 0.49
SYNE2-228ENST00000639659 RARBP10826 455 aa18.12■□□□□ 0.49
SYNE2-228ENST00000639659 HNRNPUQ00839 825 aaKnown RBP eCLIP18.12■□□□□ 0.49
SYNE2-228ENST00000639659 SLFNL1Q499Z3 407 aa18.12■□□□□ 0.49
SYNE2-228ENST00000639659 HSP90AB4PQ58FF6 505 aa18.12■□□□□ 0.49
SYNE2-228ENST00000639659 AMOTL1Q8IY63 956 aa18.12■□□□□ 0.49
SYNE2-228ENST00000639659 CLASRPQ8N2M8 674 aaKnown RBP18.12■□□□□ 0.49
SYNE2-228ENST00000639659 VCPKMTQ9H867 229 aa18.12■□□□□ 0.49
SYNE2-228ENST00000639659 XPNPEP3Q9NQH7 507 aa18.12■□□□□ 0.49
SYNE2-228ENST00000639659 SWAP70Q9UH65 585 aa18.12■□□□□ 0.49
SYNE2-228ENST00000639659 TRIM43BA6NCK2 446 aa18.11■□□□□ 0.49
SYNE2-228ENST00000639659 PQBP1O60828 265 aaKnown RBP18.11■□□□□ 0.49
SYNE2-228ENST00000639659 PGK1P00558 417 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms