RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MYH8P13535 1937 aa22.98■■□□□ 1.27
CLN3-260ENST00000637578 ERICH6BQ5W0A0 696 aa22.97■■□□□ 1.27
CLN3-260ENST00000637578 SH2D4AQ9H788 454 aa22.97■■□□□ 1.27
CLN3-260ENST00000637578 VCPKMTQ9H867 229 aa22.97■■□□□ 1.27
CLN3-260ENST00000637578 HELLSQ9NRZ9 838 aa22.97■■□□□ 1.27
CLN3-260ENST00000637578 SPDYE16A6NNV3 312 aaPredicted RBP22.97■■□□□ 1.27
CLN3-260ENST00000637578 EEF2P13639 858 aaKnown RBP22.97■■□□□ 1.27
CLN3-260ENST00000637578 MAPK4P31152 587 aa22.97■■□□□ 1.27
CLN3-260ENST00000637578 COG2Q14746 738 aa22.97■■□□□ 1.27
CLN3-260ENST00000637578 MKNK2Q9HBH9 465 aa22.97■■□□□ 1.27
CLN3-260ENST00000637578 CCDC129Q6ZRS4 1044 aa22.96■■□□□ 1.27
CLN3-260ENST00000637578 PAGR1Q9BTK6 254 aa22.96■■□□□ 1.27
CLN3-260ENST00000637578 PORCNQ9H237 461 aa22.96■■□□□ 1.27
CLN3-260ENST00000637578 HOXC10Q9NYD6 342 aa22.96■■□□□ 1.27
CLN3-260ENST00000637578 GREB1LQ9C091 1923 aaPredicted RBP22.95■■□□□ 1.27
CLN3-260ENST00000637578 MYCP01106 439 aaPredicted RBP22.95■■□□□ 1.26
CLN3-260ENST00000637578 ELNP15502 786 aa22.95■■□□□ 1.26
CLN3-260ENST00000637578 UBXN2AP68543 259 aa22.95■■□□□ 1.26
CLN3-260ENST00000637578 NAPBQ9H115 298 aa22.95■■□□□ 1.26
CLN3-260ENST00000637578 ZNF287Q9HBT7 754 aa22.95■■□□□ 1.26
CLN3-260ENST00000637578 MKI67P46013 3256 aaKnown RBP22.94■■□□□ 1.26
CLN3-260ENST00000637578 IGKV6D-41A0A0C4DH26 115 aa22.94■■□□□ 1.26
CLN3-260ENST00000637578 USP6NLQ92738 828 aa22.94■■□□□ 1.26
CLN3-260ENST00000637578 CCDC136Q96JN2 1154 aa22.94■■□□□ 1.26
CLN3-260ENST00000637578 BTBD7Q9P203 1132 aa22.94■■□□□ 1.26
CLN3-260ENST00000637578 NYAP2Q9P242 653 aa22.94■■□□□ 1.26
CLN3-260ENST00000637578 CCL5P13501 91 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 PPARAQ07869 468 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 MCMDC2Q4G0Z9 681 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 STK11IPQ8N1F8 1099 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 FAM227BQ96M60 508 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 BIN2Q9UBW5 565 aaPredicted RBP22.93■■□□□ 1.26
CLN3-260ENST00000637578 A0A0D9SFI3 127 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 WDR46O15213 610 aaKnown RBP22.93■■□□□ 1.26
CLN3-260ENST00000637578 GJB1P08034 283 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 XRCC5P13010 732 aaKnown RBP22.93■■□□□ 1.26
CLN3-260ENST00000637578 CCNA1P78396 465 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 ALX1Q15699 326 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 VPS53Q5VIR6 699 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 GPR142Q7Z601 462 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 ZNF444Q8N0Y2 327 aaPredicted RBP22.93■■□□□ 1.26
CLN3-260ENST00000637578 SPICE1Q8N0Z3 855 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 SOCS4Q8WXH5 440 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 TANGO6Q9C0B7 1094 aa22.93■■□□□ 1.26
CLN3-260ENST00000637578 TRIM6-TRIM34B2RNG4 842 aa22.92■■□□□ 1.26
CLN3-260ENST00000637578 PRDM1O75626 825 aa22.92■■□□□ 1.26
CLN3-260ENST00000637578 INHAP05111 366 aa22.92■■□□□ 1.26
CLN3-260ENST00000637578 DSG3P32926 999 aa22.92■■□□□ 1.26
CLN3-260ENST00000637578 MORN1Q5T089 497 aa22.92■■□□□ 1.26
CLN3-260ENST00000637578 NUDT12Q9BQG2 462 aa22.92■■□□□ 1.26
CLN3-260ENST00000637578 PLXNB2O15031 1838 aa22.92■■□□□ 1.26
CLN3-260ENST00000637578 RLFQ13129 1914 aa22.92■■□□□ 1.26
CLN3-260ENST00000637578 GJA8P48165 433 aa22.91■■□□□ 1.26
CLN3-260ENST00000637578 PDE4BQ07343 736 aa22.91■■□□□ 1.26
CLN3-260ENST00000637578 PLEKHH3Q7Z736 793 aa22.91■■□□□ 1.26
CLN3-260ENST00000637578 NKX2-3Q8TAU0 364 aa22.91■■□□□ 1.26
CLN3-260ENST00000637578 RNF208Q9H0X6 261 aa22.91■■□□□ 1.26
CLN3-260ENST00000637578 UNC93B1Q9H1C4 597 aa22.91■■□□□ 1.26
CLN3-260ENST00000637578 GOPCQ9HD26 462 aa22.91■■□□□ 1.26
CLN3-260ENST00000637578 PPP4R2Q9NY27 417 aa22.91■■□□□ 1.26
CLN3-260ENST00000637578 ANAPC4Q9UJX5 808 aa22.91■■□□□ 1.26
CLN3-260ENST00000637578 PLIN4Q96Q06 1357 aa22.9■■□□□ 1.26
CLN3-260ENST00000637578 SLC3A2P08195 630 aaKnown RBP22.9■■□□□ 1.26
CLN3-260ENST00000637578 ATP2B2Q01814 1243 aa22.9■■□□□ 1.26
CLN3-260ENST00000637578 NMIQ13287 307 aaPredicted RBP22.9■■□□□ 1.26
CLN3-260ENST00000637578 CENPQQ7L2Z9 268 aaPredicted RBP22.9■■□□□ 1.26
CLN3-260ENST00000637578 MB21D1Q8N884 522 aa22.9■■□□□ 1.26
CLN3-260ENST00000637578 MKL1Q969V6 931 aa22.9■■□□□ 1.26
CLN3-260ENST00000637578 RILPL2Q969X0 211 aa22.9■■□□□ 1.26
CLN3-260ENST00000637578 SHISA4Q96DD7 197 aa22.9■■□□□ 1.26
CLN3-260ENST00000637578 ADAMTS5Q9UNA0 930 aa22.9■■□□□ 1.26
CLN3-260ENST00000637578 SDSP20132 328 aa22.89■■□□□ 1.26
CLN3-260ENST00000637578 CCAR1Q8IX12 1150 aaKnown RBP22.89■■□□□ 1.26
CLN3-260ENST00000637578 NEDD1Q8NHV4 660 aa22.89■■□□□ 1.26
CLN3-260ENST00000637578 MTMR4Q9NYA4 1195 aa22.89■■□□□ 1.26
CLN3-260ENST00000637578 SYNPO2Q9UMS6 1093 aa22.89■■□□□ 1.26
CLN3-260ENST00000637578 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.89■■□□□ 1.26
CLN3-260ENST00000637578 FLOT1O75955 427 aa22.89■■□□□ 1.25
CLN3-260ENST00000637578 HMGCRP04035 888 aa22.89■■□□□ 1.25
CLN3-260ENST00000637578 ZNF589Q86UQ0 364 aaPredicted RBP22.89■■□□□ 1.25
CLN3-260ENST00000637578 PAK6Q9NQU5 681 aaPredicted RBP22.89■■□□□ 1.25
CLN3-260ENST00000637578 PDE4DIPQ5VU43 2346 aa22.88■■□□□ 1.25
CLN3-260ENST00000637578 FGRP09769 529 aa22.88■■□□□ 1.25
CLN3-260ENST00000637578 CYP2B6P20813 491 aa22.88■■□□□ 1.25
CLN3-260ENST00000637578 TRIB2Q92519 343 aa22.88■■□□□ 1.25
CLN3-260ENST00000637578 CEP95Q96GE4 821 aa22.88■■□□□ 1.25
CLN3-260ENST00000637578 ZMYM6O95789 1325 aa22.87■■□□□ 1.25
CLN3-260ENST00000637578 FGAP02671 866 aa22.87■■□□□ 1.25
CLN3-260ENST00000637578 HSPD1P10809 573 aaKnown RBP22.87■■□□□ 1.25
CLN3-260ENST00000637578 PDE4AP27815 886 aa22.87■■□□□ 1.25
CLN3-260ENST00000637578 SHCBP1Q8NEM2 672 aa22.87■■□□□ 1.25
CLN3-260ENST00000637578 ATG4CQ96DT6 458 aa22.87■■□□□ 1.25
CLN3-260ENST00000637578 MOV10L1Q9BXT6 1211 aaKnown RBP22.87■■□□□ 1.25
CLN3-260ENST00000637578 SPATC1LQ9H0A9 340 aa22.87■■□□□ 1.25
CLN3-260ENST00000637578 CLIP2Q9UDT6 1046 aa22.87■■□□□ 1.25
CLN3-260ENST00000637578 TACC3Q9Y6A5 838 aa22.87■■□□□ 1.25
CLN3-260ENST00000637578 A0A0G2JMZ2 1700 aa22.87■■□□□ 1.25
CLN3-260ENST00000637578 SLC15A5A6NIM6 579 aa22.86■■□□□ 1.25
CLN3-260ENST00000637578 F5H6K3 240 aa22.86■■□□□ 1.25
CLN3-260ENST00000637578 SGPL1O95470 568 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms