RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 MAPK4P31152 587 aa16.47■□□□□ 0.23
PNKP-228ENST00000637325 CCNA1P78396 465 aa16.47■□□□□ 0.23
PNKP-228ENST00000637325 IRX6P78412 446 aaPredicted RBP16.47■□□□□ 0.23
PNKP-228ENST00000637325 NUCB1Q02818 461 aa16.47■□□□□ 0.23
PNKP-228ENST00000637325 MTFR1Q15390 333 aa16.47■□□□□ 0.23
PNKP-228ENST00000637325 Q3C1V9 767 aa16.47■□□□□ 0.23
PNKP-228ENST00000637325 ZNF444Q8N0Y2 327 aaPredicted RBP16.47■□□□□ 0.23
PNKP-228ENST00000637325 PXYLP1Q8TE99 480 aa16.47■□□□□ 0.23
PNKP-228ENST00000637325 LPAR1Q92633 364 aa16.47■□□□□ 0.23
PNKP-228ENST00000637325 RNF208Q9H0X6 261 aa16.47■□□□□ 0.23
PNKP-228ENST00000637325 HOXC10Q9NYD6 342 aa16.47■□□□□ 0.23
PNKP-228ENST00000637325 TMX2Q9Y320 296 aa16.47■□□□□ 0.23
PNKP-228ENST00000637325 PARP14Q460N5 1801 aa16.47■□□□□ 0.23
PNKP-228ENST00000637325 RLFQ13129 1914 aa16.47■□□□□ 0.23
PNKP-228ENST00000637325 GREB1LQ9C091 1923 aaPredicted RBP16.47■□□□□ 0.23
PNKP-228ENST00000637325 CCL5P13501 91 aa16.46■□□□□ 0.23
PNKP-228ENST00000637325 EEF2P13639 858 aaKnown RBP16.46■□□□□ 0.23
PNKP-228ENST00000637325 COG2Q14746 738 aa16.46■□□□□ 0.23
PNKP-228ENST00000637325 CCDC129Q6ZRS4 1044 aa16.46■□□□□ 0.23
PNKP-228ENST00000637325 SPICE1Q8N0Z3 855 aa16.46■□□□□ 0.23
PNKP-228ENST00000637325 VCPKMTQ9H867 229 aa16.46■□□□□ 0.23
PNKP-228ENST00000637325 HELLSQ9NRZ9 838 aa16.46■□□□□ 0.23
PNKP-228ENST00000637325 COL11A1P12107 1806 aaPredicted RBP16.46■□□□□ 0.23
PNKP-228ENST00000637325 SPDYE16A6NNV3 312 aaPredicted RBP16.45■□□□□ 0.22
PNKP-228ENST00000637325 INHAP05111 366 aa16.45■□□□□ 0.22
PNKP-228ENST00000637325 RASA1P20936 1047 aa16.45■□□□□ 0.22
PNKP-228ENST00000637325 PDE4BQ07343 736 aa16.45■□□□□ 0.22
PNKP-228ENST00000637325 WDR78Q5VTH9 848 aa16.45■□□□□ 0.22
PNKP-228ENST00000637325 SAMD1Q6SPF0 538 aaPredicted RBP16.45■□□□□ 0.22
PNKP-228ENST00000637325 SIAH1Q8IUQ4 282 aa16.45■□□□□ 0.22
PNKP-228ENST00000637325 NUDT12Q9BQG2 462 aa16.45■□□□□ 0.22
PNKP-228ENST00000637325 GOPCQ9HD26 462 aa16.45■□□□□ 0.22
PNKP-228ENST00000637325 GJD2Q9UKL4 321 aa16.45■□□□□ 0.22
PNKP-228ENST00000637325 ROBO3Q96MS0 1386 aa16.45■□□□□ 0.22
PNKP-228ENST00000637325 PRDM1O75626 825 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 FLOT1O75955 427 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 CYP2B6P20813 491 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 MCMDC2Q4G0Z9 681 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 KIAA1755Q5JYT7 1200 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 LBX2Q6XYB7 198 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 GPR142Q7Z601 462 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 PLEKHH3Q7Z736 793 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 TICAM2Q86XR7 235 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 PLEKHM2Q8IWE5 1019 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 NKX2-3Q8TAU0 364 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 SOCS4Q8WXH5 440 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 PORCNQ9H237 461 aa16.44■□□□□ 0.22
PNKP-228ENST00000637325 BRCA2P51587 3418 aa16.43■□□□□ 0.22
PNKP-228ENST00000637325 WDR46O15213 610 aaKnown RBP16.43■□□□□ 0.22
PNKP-228ENST00000637325 CNMDO75829 334 aa16.43■□□□□ 0.22
PNKP-228ENST00000637325 GJB1P08034 283 aa16.43■□□□□ 0.22
PNKP-228ENST00000637325 PPARAQ07869 468 aa16.43■□□□□ 0.22
PNKP-228ENST00000637325 POTEEQ6S8J3 1075 aa16.43■□□□□ 0.22
PNKP-228ENST00000637325 UNC93B1Q9H1C4 597 aa16.43■□□□□ 0.22
PNKP-228ENST00000637325 BTBD7Q9P203 1132 aa16.43■□□□□ 0.22
PNKP-228ENST00000637325 TSPY3P0CV98 308 aa16.42■□□□□ 0.22
PNKP-228ENST00000637325 TSPY8P0CW00 308 aa16.42■□□□□ 0.22
PNKP-228ENST00000637325 DSG3P32926 999 aa16.42■□□□□ 0.22
PNKP-228ENST00000637325 RGS2P41220 211 aa16.42■□□□□ 0.22
PNKP-228ENST00000637325 FAM227BQ96M60 508 aa16.42■□□□□ 0.22
PNKP-228ENST00000637325 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.42■□□□□ 0.22
PNKP-228ENST00000637325 OSBPL3Q9H4L5 887 aa16.42■□□□□ 0.22
PNKP-228ENST00000637325 IVNS1ABPQ9Y6Y0 642 aa16.42■□□□□ 0.22
PNKP-228ENST00000637325 A0A0D9SFI3 127 aa16.41■□□□□ 0.22
PNKP-228ENST00000637325 HMGCRP04035 888 aa16.41■□□□□ 0.22
PNKP-228ENST00000637325 GJA8P48165 433 aa16.41■□□□□ 0.22
PNKP-228ENST00000637325 NMIQ13287 307 aaPredicted RBP16.41■□□□□ 0.22
PNKP-228ENST00000637325 PLS1Q14651 629 aa16.41■□□□□ 0.22
PNKP-228ENST00000637325 VPS53Q5VIR6 699 aa16.41■□□□□ 0.22
PNKP-228ENST00000637325 TRMT44Q8IYL2 757 aaKnown RBP16.41■□□□□ 0.22
PNKP-228ENST00000637325 MB21D1Q8N884 522 aa16.41■□□□□ 0.22
PNKP-228ENST00000637325 NYAP2Q9P242 653 aa16.41■□□□□ 0.22
PNKP-228ENST00000637325 CLIP2Q9UDT6 1046 aa16.41■□□□□ 0.22
PNKP-228ENST00000637325 XRCC5P13010 732 aaKnown RBP16.4■□□□□ 0.22
PNKP-228ENST00000637325 SDSP20132 328 aa16.4■□□□□ 0.22
PNKP-228ENST00000637325 MFAP1P55081 439 aaKnown RBP16.4■□□□□ 0.22
PNKP-228ENST00000637325 TFAP4Q01664 338 aa16.4■□□□□ 0.22
PNKP-228ENST00000637325 CTDSPL2Q05D32 466 aa16.4■□□□□ 0.22
PNKP-228ENST00000637325 FAM47AQ5JRC9 791 aa16.4■□□□□ 0.22
PNKP-228ENST00000637325 MORN1Q5T089 497 aa16.4■□□□□ 0.22
PNKP-228ENST00000637325 FAM83BQ5T0W9 1011 aa16.4■□□□□ 0.22
PNKP-228ENST00000637325 ATG4CQ96DT6 458 aa16.4■□□□□ 0.22
PNKP-228ENST00000637325 MKI67P46013 3256 aaKnown RBP16.39■□□□□ 0.21
PNKP-228ENST00000637325 A0A0G2JMZ2 1700 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 SGPL1O95470 568 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 TTLL1O95922 423 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 TFRCP02786 760 aaKnown RBP16.39■□□□□ 0.21
PNKP-228ENST00000637325 ZKSCAN1P17029 563 aaPredicted RBP16.39■□□□□ 0.21
PNKP-228ENST00000637325 PTPREP23469 700 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 MAP2K5Q13163 448 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 ALX1Q15699 326 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 NEDD1Q8NHV4 660 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 U2AF1L4Q8WU68 220 aaKnown RBP16.39■□□□□ 0.21
PNKP-228ENST00000637325 TRIB2Q92519 343 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 CEP95Q96GE4 821 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 DEFB118Q96PH6 123 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 SPATC1LQ9H0A9 340 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 DIAPH3Q9NSV4 1193 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 CCDC171Q6TFL3 1326 aa16.39■□□□□ 0.21
PNKP-228ENST00000637325 CEP290O15078 2479 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms