RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 JAG1P78504 1218 aa21.39■■□□□ 1.01
CLN3-254ENST00000637050 SEPT2Q15019 361 aa21.39■■□□□ 1.01
CLN3-254ENST00000637050 MKL1Q969V6 931 aa21.39■■□□□ 1.01
CLN3-254ENST00000637050 L3MBTL3Q96JM7 780 aaPredicted RBP21.39■■□□□ 1.01
CLN3-254ENST00000637050 AIFM3Q96NN9 605 aa21.39■■□□□ 1.01
CLN3-254ENST00000637050 ADARB2Q9NS39 739 aaKnown RBP21.39■■□□□ 1.01
CLN3-254ENST00000637050 CNTNAP5Q8WYK1 1306 aa21.39■■□□□ 1.01
CLN3-254ENST00000637050 UBE2Q2LH0YL09 131 aa21.38■■□□□ 1.01
CLN3-254ENST00000637050 FOSBP53539 338 aa21.38■■□□□ 1.01
CLN3-254ENST00000637050 MIGA2Q7L4E1 593 aa21.38■■□□□ 1.01
CLN3-254ENST00000637050 STAG2Q8N3U4 1231 aa21.38■■□□□ 1.01
CLN3-254ENST00000637050 CABP5Q9NP86 173 aa21.38■■□□□ 1.01
CLN3-254ENST00000637050 GH2P01242 217 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 SNHG28P0DPA3 235 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 RESTQ13127 1097 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 NBR1Q14596 966 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 FERMT3Q86UX7 667 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 SIAH1Q8IUQ4 282 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 LRRC47Q8N1G4 583 aaKnown RBP21.37■■□□□ 1.01
CLN3-254ENST00000637050 CHAMP1Q96JM3 812 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 GGA3Q9NZ52 723 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 SRCAPQ6ZRS2 3230 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 DDX11L8A8MPP1 907 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 PDHBP11177 359 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 EEF2P13639 858 aaKnown RBP21.37■■□□□ 1.01
CLN3-254ENST00000637050 ICA1Q05084 483 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 LZTS2Q9BRK4 669 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 ZSCAN16Q9H4T2 348 aaPredicted RBP21.37■■□□□ 1.01
CLN3-254ENST00000637050 PITPNM2Q9BZ72 1349 aa21.37■■□□□ 1.01
CLN3-254ENST00000637050 MYH4Q9Y623 1939 aa21.36■■□□□ 1.01
CLN3-254ENST00000637050 PARP1P09874 1014 aaKnown RBP21.36■■□□□ 1.01
CLN3-254ENST00000637050 AKAP17AQ02040 695 aaKnown RBP21.36■■□□□ 1.01
CLN3-254ENST00000637050 GUCY1B3Q02153 619 aa21.36■■□□□ 1.01
CLN3-254ENST00000637050 PKN1Q16512 942 aa21.36■■□□□ 1.01
CLN3-254ENST00000637050 OTUD7BQ6GQQ9 843 aa21.36■■□□□ 1.01
CLN3-254ENST00000637050 GJB4Q9NTQ9 266 aa21.36■■□□□ 1.01
CLN3-254ENST00000637050 MTMR7Q9Y216 660 aa21.36■■□□□ 1.01
CLN3-254ENST00000637050 PPP2R3BQ9Y5P8 575 aa21.36■■□□□ 1.01
CLN3-254ENST00000637050 V9GY48 417 aaPredicted RBP21.36■■□□□ 1.01
CLN3-254ENST00000637050 USP17L5A8MUK1 530 aa21.35■■□□□ 1.01
CLN3-254ENST00000637050 CAP2P40123 477 aa21.35■■□□□ 1.01
CLN3-254ENST00000637050 MCTP1Q6DN14 999 aa21.35■■□□□ 1.01
CLN3-254ENST00000637050 USP17L2Q6R6M4 530 aa21.35■■□□□ 1.01
CLN3-254ENST00000637050 RASGRP2Q7LDG7 609 aa21.35■■□□□ 1.01
CLN3-254ENST00000637050 UTRNP46939 3433 aa21.35■■□□□ 1.01
CLN3-254ENST00000637050 GLTPD2A6NH11 291 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 PHF20L1A8MW92 1017 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 GOLGA6L22H0YM25 854 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 SMARCA1P28370 1054 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 ATP2B2Q01814 1243 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 KRT40Q6A162 431 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 RBM27Q9P2N5 1060 aaKnown RBP21.34■■□□□ 1.01
CLN3-254ENST00000637050 ZBTB21Q9ULJ3 1066 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 KLRF2D3W0D1 207 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 GOLGA8HP0CJ92 632 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 SLC35G1Q2M3R5 365 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 FOXD4L6Q3SYB3 417 aaPredicted RBP21.34■■□□□ 1.01
CLN3-254ENST00000637050 ASPRV1Q53RT3 343 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 NBPF12Q5TAG4 269 aaPredicted RBP21.34■■□□□ 1.01
CLN3-254ENST00000637050 FOXD4L3Q6VB84 417 aaPredicted RBP21.34■■□□□ 1.01
CLN3-254ENST00000637050 SPZ1Q9BXG8 430 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 SYNPO2Q9UMS6 1093 aa21.34■■□□□ 1.01
CLN3-254ENST00000637050 MYH6P13533 1939 aa21.33■■□□□ 1.01
CLN3-254ENST00000637050 TRIM29Q14134 588 aa21.33■■□□□ 1
CLN3-254ENST00000637050 HOOK2Q96ED9 719 aa21.33■■□□□ 1
CLN3-254ENST00000637050 CYTH3O43739 400 aa21.32■■□□□ 1
CLN3-254ENST00000637050 ZNF543Q08ER8 600 aa21.32■■□□□ 1
CLN3-254ENST00000637050 hCG_1642624A0A1W2PR95 340 aa21.31■■□□□ 1
CLN3-254ENST00000637050 PRKCSHP14314 528 aaPredicted RBP21.31■■□□□ 1
CLN3-254ENST00000637050 PTMSP20962 102 aa21.31■■□□□ 1
CLN3-254ENST00000637050 DNM1Q05193 864 aaKnown RBP21.31■■□□□ 1
CLN3-254ENST00000637050 PFKFB3Q16875 520 aaPredicted RBP21.31■■□□□ 1
CLN3-254ENST00000637050 DCAF15Q66K64 600 aa21.31■■□□□ 1
CLN3-254ENST00000637050 GMCL1P1Q8NEA9 526 aa21.31■■□□□ 1
CLN3-254ENST00000637050 ASNSP08243 561 aa21.31■■□□□ 1
CLN3-254ENST00000637050 SCG2P13521 617 aa21.31■■□□□ 1
CLN3-254ENST00000637050 KIF23Q02241 960 aaPredicted RBP21.31■■□□□ 1
CLN3-254ENST00000637050 FAM173BQ6P4H8 233 aa21.31■■□□□ 1
CLN3-254ENST00000637050 USP50Q70EL3 339 aaPredicted RBP21.31■■□□□ 1
CLN3-254ENST00000637050 GINM1Q9NU53 330 aa21.31■■□□□ 1
CLN3-254ENST00000637050 A0A1W2PRG0 241 aa21.3■■□□□ 1
CLN3-254ENST00000637050 MMP1P03956 469 aa21.3■■□□□ 1
CLN3-254ENST00000637050 GPATCH4Q5T3I0 446 aaKnown RBP21.3■■□□□ 1
CLN3-254ENST00000637050 DCAF4Q8WV16 495 aa21.3■■□□□ 1
CLN3-254ENST00000637050 SHISA4Q96DD7 197 aa21.3■■□□□ 1
CLN3-254ENST00000637050 RIOX1Q9H6W3 641 aa21.3■■□□□ 1
CLN3-254ENST00000637050 ARHGEF10LQ9HCE6 1279 aa21.3■■□□□ 1
CLN3-254ENST00000637050 CNPY2Q9Y2B0 182 aa21.3■■□□□ 1
CLN3-254ENST00000637050 FRMPD2Q68DX3 1309 aaPredicted RBP21.29■■□□□ 1
CLN3-254ENST00000637050 CTNND1O60716 968 aaKnown RBP21.29■■□□□ 1
CLN3-254ENST00000637050 XBP1P17861 261 aa21.29■■□□□ 1
CLN3-254ENST00000637050 SLFN13Q68D06 897 aa21.29■■□□□ 1
CLN3-254ENST00000637050 BRAPQ7Z569 592 aa21.29■■□□□ 1
CLN3-254ENST00000637050 ZNF341Q9BYN7 854 aa21.29■■□□□ 1
CLN3-254ENST00000637050 LMBRD1Q9NUN5 540 aa21.29■■□□□ 1
CLN3-254ENST00000637050 ZNF112Q9UJU3 913 aa21.29■■□□□ 1
CLN3-254ENST00000637050 KIF28PB7ZC32 967 aa21.28■■□□□ 1
CLN3-254ENST00000637050 F5H6K3 240 aa21.28■■□□□ 1
CLN3-254ENST00000637050 EPHX2P34913 555 aa21.28■■□□□ 1
CLN3-254ENST00000637050 KLRC3Q07444 240 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms