RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 FAM13BQ9NYF5 915 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 TUBE1Q9UJT0 475 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 VWA3AA6NCI4 1184 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 SCG2P13521 617 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 CDC25AP30304 524 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 MCM7P33993 719 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 PPP2R5BQ15173 497 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 TYW1BQ6NUM6 668 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 HSD3B7Q9H2F3 369 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 SPTLC3Q9NUV7 552 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 SRPRBQ9Y5M8 271 aaKnown RBP12.16□□□□□ -0.46
CUX1-221ENST00000622516 TPM3P06753 285 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 ATP2B4P23634 1241 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 PTGDRQ13258 359 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 SLC35G1Q2M3R5 365 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 TRMT44Q8IYL2 757 aaKnown RBP12.16□□□□□ -0.46
CUX1-221ENST00000622516 RGS22Q8NE09 1264 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 DPF2Q92785 391 aa12.16□□□□□ -0.46
CUX1-221ENST00000622516 ZNF219Q9P2Y4 722 aaPredicted RBP12.16□□□□□ -0.46
CUX1-221ENST00000622516 GSTO1P78417 241 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 MDM2Q00987 491 aaPredicted RBP12.15□□□□□ -0.46
CUX1-221ENST00000622516 POSTNQ15063 836 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 TMC6Q7Z403 805 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 VAT1LQ9HCJ6 419 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 FANCLQ9NW38 375 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 USP27XA6NNY8 438 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 CYTH3O43739 400 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 BBOX1O75936 387 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 RASA1P20936 1047 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 SCNN1DP51172 638 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 EIF6P56537 245 aaKnown RBP12.15□□□□□ -0.46
CUX1-221ENST00000622516 CLEC10AQ8IUN9 316 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 AMOTL1Q8IY63 956 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 SYMPKQ92797 1274 aaKnown RBP12.15□□□□□ -0.46
CUX1-221ENST00000622516 TMEM47Q9BQJ4 181 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 TRMT1Q9NXH9 659 aaKnown RBP12.15□□□□□ -0.46
CUX1-221ENST00000622516 UBR3Q6ZT12 1888 aa12.15□□□□□ -0.46
CUX1-221ENST00000622516 FAM237AA0A1B0GTK4 181 aa12.15□□□□□ -0.47
CUX1-221ENST00000622516 COBLO75128 1261 aa12.15□□□□□ -0.47
CUX1-221ENST00000622516 SKILP12757 684 aa12.15□□□□□ -0.47
CUX1-221ENST00000622516 GOLGA8FQ08AF8 430 aa12.15□□□□□ -0.47
CUX1-221ENST00000622516 GOLGA8DPQ0D2H9 430 aa12.15□□□□□ -0.47
CUX1-221ENST00000622516 TTC38Q5R3I4 469 aa12.15□□□□□ -0.47
CUX1-221ENST00000622516 HOMER1Q86YM7 354 aa12.15□□□□□ -0.47
CUX1-221ENST00000622516 BRMS1Q9HCU9 246 aa12.15□□□□□ -0.47
CUX1-221ENST00000622516 MAD2L2Q9UI95 211 aa12.15□□□□□ -0.47
CUX1-221ENST00000622516 MAN1B1Q9UKM7 699 aa12.15□□□□□ -0.47
CUX1-221ENST00000622516 FAM205AQ6ZU69 1335 aa12.15□□□□□ -0.47
CUX1-221ENST00000622516 PPEF1O14829 653 aaPredicted RBP12.14□□□□□ -0.47
CUX1-221ENST00000622516 LDHCP07864 332 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 IL1R1P14778 569 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 CDK8P49336 464 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 PPP4CP60510 307 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 PFKFB3Q16875 520 aaPredicted RBP12.14□□□□□ -0.47
CUX1-221ENST00000622516 SLC27A3Q5K4L6 730 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 COL23A1Q86Y22 540 aaPredicted RBP12.14□□□□□ -0.47
CUX1-221ENST00000622516 TNFRSF25Q93038 417 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 EYA3Q99504 573 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 KCNQ5Q9NR82 932 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 CEP131Q9UPN4 1083 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 FLT1P17948 1338 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 TPM2P07951 284 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 CDC25BP30305 580 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 KIF5BP33176 963 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 FANCCQ00597 558 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 USP17L2Q6R6M4 530 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 HEATR3Q7Z4Q2 680 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 SMYD4Q8IYR2 804 aaPredicted RBP12.14□□□□□ -0.47
CUX1-221ENST00000622516 KIAA1551Q9HCM1 1747 aa12.14□□□□□ -0.47
CUX1-221ENST00000622516 GPR75-ASB3A0A0A6YYF3 556 aa12.13□□□□□ -0.47
CUX1-221ENST00000622516 ACTN4O43707 911 aaKnown RBP12.13□□□□□ -0.47
CUX1-221ENST00000622516 SERPINC1P01008 464 aa12.13□□□□□ -0.47
CUX1-221ENST00000622516 RHBDL3P58872 404 aa12.13□□□□□ -0.47
CUX1-221ENST00000622516 FMR1Q06787 632 aaKnown RBP eCLIP12.13□□□□□ -0.474e-6■■■■□ 21.6
CUX1-221ENST00000622516 DGKHQ86XP1 1220 aa12.13□□□□□ -0.47
CUX1-221ENST00000622516 ARID3AQ99856 593 aa12.13□□□□□ -0.47
CUX1-221ENST00000622516 BPIFA3Q9BQP9 254 aa12.13□□□□□ -0.47
CUX1-221ENST00000622516 SMTNL1A8MU46 457 aa12.13□□□□□ -0.47
CUX1-221ENST00000622516 APBA3O96018 575 aa12.13□□□□□ -0.47
CUX1-221ENST00000622516 IL17AQ16552 155 aa12.13□□□□□ -0.47
CUX1-221ENST00000622516 KLHL10Q6JEL2 608 aa12.13□□□□□ -0.47
CUX1-221ENST00000622516 TMEM232C9JQI7 657 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 MYL5Q02045 173 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 TPD52L1Q16890 204 aaPredicted RBP12.12□□□□□ -0.47
CUX1-221ENST00000622516 CFAP100Q494V2 611 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 CERS5Q8N5B7 392 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 ZNF592Q92610 1267 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 SMARCE1Q969G3 411 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 UBA5Q9GZZ9 404 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 BLZF1Q9H2G9 400 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 HOXA10P31260 410 aaPredicted RBP12.12□□□□□ -0.47
CUX1-221ENST00000622516 STX17P56962 302 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 UBASH3AP57075 661 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 WWC2Q6AWC2 1192 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 SAMD1Q6SPF0 538 aaPredicted RBP12.12□□□□□ -0.47
CUX1-221ENST00000622516 CEP95Q96GE4 821 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 ZC3H12CQ9C0D7 883 aaKnown RBP12.12□□□□□ -0.47
CUX1-221ENST00000622516 DAGLAQ9Y4D2 1042 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 KLRF2D3W0D1 207 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 MMP10P09238 476 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms