RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 TMEM179Q6ZVK1 233 aa22.85■■□□□ 1.25
CDX1-202ENST00000616154 LRRCC1Q9C099 1032 aa22.85■■□□□ 1.25
CDX1-202ENST00000616154 BOLA2Q9H3K6 86 aa22.85■■□□□ 1.25
CDX1-202ENST00000616154 PFASO15067 1338 aa22.85■■□□□ 1.25
CDX1-202ENST00000616154 MBD4O95243 580 aa22.84■■□□□ 1.25
CDX1-202ENST00000616154 COL6A1P12109 1028 aa22.84■■□□□ 1.25
CDX1-202ENST00000616154 SLC44A5Q8NCS7 719 aa22.84■■□□□ 1.25
CDX1-202ENST00000616154 HAUS7Q99871 368 aa22.84■■□□□ 1.25
CDX1-202ENST00000616154 GDF15Q99988 308 aa22.84■■□□□ 1.25
CDX1-202ENST00000616154 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.84■■□□□ 1.25
CDX1-202ENST00000616154 BCL11AQ9H165 835 aa22.84■■□□□ 1.25
CDX1-202ENST00000616154 ATP8A2Q9NTI2 1148 aa22.84■■□□□ 1.25
CDX1-202ENST00000616154 FLRT1Q9NZU1 646 aa22.84■■□□□ 1.25
CDX1-202ENST00000616154 IVNS1ABPQ9Y6Y0 642 aa22.84■■□□□ 1.25
CDX1-202ENST00000616154 PARP14Q460N5 1801 aa22.84■■□□□ 1.25
CDX1-202ENST00000616154 BMP8BP34820 402 aa22.83■■□□□ 1.25
CDX1-202ENST00000616154 COG2Q14746 738 aa22.83■■□□□ 1.25
CDX1-202ENST00000616154 MFSD14CQ5VZR4 134 aa22.83■■□□□ 1.25
CDX1-202ENST00000616154 ZMYND8Q9ULU4 1186 aaPredicted RBP22.83■■□□□ 1.25
CDX1-202ENST00000616154 PRKAB2O43741 272 aa22.82■■□□□ 1.24
CDX1-202ENST00000616154 SLFNL1Q499Z3 407 aa22.82■■□□□ 1.24
CDX1-202ENST00000616154 DYNLL2Q96FJ2 89 aa22.82■■□□□ 1.24
CDX1-202ENST00000616154 HOXC10Q9NYD6 342 aa22.82■■□□□ 1.24
CDX1-202ENST00000616154 PCDHB15Q9Y5E8 787 aa22.82■■□□□ 1.24
CDX1-202ENST00000616154 UBE3CQ15386 1083 aa22.82■■□□□ 1.24
CDX1-202ENST00000616154 LPAR1Q92633 364 aa22.82■■□□□ 1.24
CDX1-202ENST00000616154 TANGO6Q9C0B7 1094 aa22.82■■□□□ 1.24
CDX1-202ENST00000616154 AKR1B1P15121 316 aa22.81■■□□□ 1.24
CDX1-202ENST00000616154 ATP2B2Q01814 1243 aa22.81■■□□□ 1.24
CDX1-202ENST00000616154 KIAA1755Q5JYT7 1200 aa22.81■■□□□ 1.24
CDX1-202ENST00000616154 C12orf60Q5U649 245 aa22.81■■□□□ 1.24
CDX1-202ENST00000616154 NPLOC4Q8TAT6 608 aa22.81■■□□□ 1.24
CDX1-202ENST00000616154 MOV10L1Q9BXT6 1211 aaKnown RBP22.81■■□□□ 1.24
CDX1-202ENST00000616154 ARHGEF10LQ9HCE6 1279 aa22.81■■□□□ 1.24
CDX1-202ENST00000616154 SUPT16HQ9Y5B9 1047 aaKnown RBP22.81■■□□□ 1.24
CDX1-202ENST00000616154 SOX1O00570 391 aaPredicted RBP22.8■■□□□ 1.24
CDX1-202ENST00000616154 IGHA2P01877 340 aa22.8■■□□□ 1.24
CDX1-202ENST00000616154 ICA1Q05084 483 aa22.8■■□□□ 1.24
CDX1-202ENST00000616154 SIAH1Q8IUQ4 282 aa22.8■■□□□ 1.24
CDX1-202ENST00000616154 AMOTL1Q8IY63 956 aa22.8■■□□□ 1.24
CDX1-202ENST00000616154 MB21D1Q8N884 522 aa22.8■■□□□ 1.24
CDX1-202ENST00000616154 SHCBP1Q8NEM2 672 aa22.8■■□□□ 1.24
CDX1-202ENST00000616154 CCDC17Q96LX7 622 aa22.8■■□□□ 1.24
CDX1-202ENST00000616154 SPATC1LQ9H0A9 340 aa22.8■■□□□ 1.24
CDX1-202ENST00000616154 SH2D4AQ9H788 454 aa22.8■■□□□ 1.24
CDX1-202ENST00000616154 TMX2Q9Y320 296 aa22.8■■□□□ 1.24
CDX1-202ENST00000616154 STRNO43815 780 aa22.79■■□□□ 1.24
CDX1-202ENST00000616154 MSCO60682 206 aa22.79■■□□□ 1.24
CDX1-202ENST00000616154 CHGBP05060 677 aa22.79■■□□□ 1.24
CDX1-202ENST00000616154 SYN1P17600 705 aa22.79■■□□□ 1.24
CDX1-202ENST00000616154 CDK8P49336 464 aa22.79■■□□□ 1.24
CDX1-202ENST00000616154 CLEC10AQ8IUN9 316 aa22.79■■□□□ 1.24
CDX1-202ENST00000616154 VCPKMTQ9H867 229 aa22.79■■□□□ 1.24
CDX1-202ENST00000616154 DDX20Q9UHI6 824 aaKnown RBP22.79■■□□□ 1.24
CDX1-202ENST00000616154 CYP2D7A0A087X1C5 515 aa22.78■■□□□ 1.24
CDX1-202ENST00000616154 USP17L12C9JPN9 530 aa22.78■■□□□ 1.24
CDX1-202ENST00000616154 USP17L21D6R901 530 aa22.78■■□□□ 1.24
CDX1-202ENST00000616154 DSG3P32926 999 aa22.78■■□□□ 1.24
CDX1-202ENST00000616154 MAGEA10P43363 369 aaPredicted RBP22.78■■□□□ 1.24
CDX1-202ENST00000616154 ZSCAN25Q6NSZ9 544 aa22.78■■□□□ 1.24
CDX1-202ENST00000616154 C16orf86Q6ZW13 317 aa22.78■■□□□ 1.24
CDX1-202ENST00000616154 DDRGK1Q96HY6 314 aa22.78■■□□□ 1.24
CDX1-202ENST00000616154 COL11A1P12107 1806 aaPredicted RBP22.78■■□□□ 1.24
CDX1-202ENST00000616154 ZNFX1Q9P2E3 1918 aaKnown RBP22.77■■□□□ 1.24
CDX1-202ENST00000616154 SMIM22K7EJ46 135 aa22.77■■□□□ 1.24
CDX1-202ENST00000616154 SMARCA5O60264 1052 aaPredicted RBP22.77■■□□□ 1.24
CDX1-202ENST00000616154 ERCC3P19447 782 aa22.77■■□□□ 1.24
CDX1-202ENST00000616154 ADORA2AP29274 412 aa22.77■■□□□ 1.24
CDX1-202ENST00000616154 CYP2C19P33261 490 aa22.77■■□□□ 1.24
CDX1-202ENST00000616154 LRRC26Q2I0M4 334 aa22.77■■□□□ 1.24
CDX1-202ENST00000616154 OLFML2BQ68BL8 750 aa22.77■■□□□ 1.24
CDX1-202ENST00000616154 DPP9Q86TI2 863 aa22.77■■□□□ 1.24
CDX1-202ENST00000616154 LRCH3Q96II8 777 aa22.77■■□□□ 1.24
CDX1-202ENST00000616154 SLC4A4Q9Y6R1 1079 aa22.77■■□□□ 1.24
CDX1-202ENST00000616154 GREB1LQ9C091 1923 aaPredicted RBP22.77■■□□□ 1.23
CDX1-202ENST00000616154 WDR46O15213 610 aaKnown RBP22.76■■□□□ 1.23
CDX1-202ENST00000616154 FLOT1O75955 427 aa22.76■■□□□ 1.23
CDX1-202ENST00000616154 CYBAP13498 195 aa22.76■■□□□ 1.23
CDX1-202ENST00000616154 AAMPQ13685 434 aa22.76■■□□□ 1.23
CDX1-202ENST00000616154 SPICE1Q8N0Z3 855 aa22.76■■□□□ 1.23
CDX1-202ENST00000616154 TRPV1Q8NER1 839 aa22.76■■□□□ 1.23
CDX1-202ENST00000616154 MROH8Q9H579 483 aa22.76■■□□□ 1.23
CDX1-202ENST00000616154 ECHDC1Q9NTX5 307 aa22.76■■□□□ 1.23
CDX1-202ENST00000616154 CNGA1P29973 690 aa22.75■■□□□ 1.23
CDX1-202ENST00000616154 ATG4CQ96DT6 458 aa22.75■■□□□ 1.23
CDX1-202ENST00000616154 CRBNQ96SW2 442 aa22.75■■□□□ 1.23
CDX1-202ENST00000616154 PUS7LQ9H0K6 701 aaKnown RBP22.75■■□□□ 1.23
CDX1-202ENST00000616154 DNAH12Q6ZR08 3092 aa22.74■■□□□ 1.23
CDX1-202ENST00000616154 CTR9Q6PD62 1173 aa22.74■■□□□ 1.23
CDX1-202ENST00000616154 ABRAQ8N0Z2 381 aa22.74■■□□□ 1.23
CDX1-202ENST00000616154 KANSL2Q9H9L4 492 aa22.74■■□□□ 1.23
CDX1-202ENST00000616154 DNM1LO00429 736 aa22.73■■□□□ 1.23
CDX1-202ENST00000616154 EEF2P13639 858 aaKnown RBP22.73■■□□□ 1.23
CDX1-202ENST00000616154 PLS1Q14651 629 aa22.73■■□□□ 1.23
CDX1-202ENST00000616154 LRIT3Q3SXY7 679 aa22.73■■□□□ 1.23
CDX1-202ENST00000616154 GPR153Q6NV75 609 aa22.73■■□□□ 1.23
CDX1-202ENST00000616154 TDHQ8IZJ6 230 aa22.73■■□□□ 1.23
CDX1-202ENST00000616154 SLC5A4Q9NY91 659 aa22.73■■□□□ 1.23
CDX1-202ENST00000616154 ARPP21Q9UBL0 812 aaPredicted RBP22.73■■□□□ 1.23
CDX1-202ENST00000616154 COBLO75128 1261 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms