RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 TRIM43BA6NCK2 446 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 ITGB8P26012 769 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 ADORA2AP29274 412 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 CNGA1P29973 690 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 PRAMEF19Q5SWL8 479 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 C1orf53Q5VUE5 145 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 SH3RF1Q7Z6J0 888 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 CERS3Q8IU89 383 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 ARRDC4Q8NCT1 418 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 TRIM43Q96BQ3 446 aaPredicted RBP7.45□□□□□ -1.22
VRK3-220ENST00000600259 FAM161BQ96MY7 647 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 CDX2Q99626 313 aaPredicted RBP7.45□□□□□ -1.22
VRK3-220ENST00000600259 FEZ1Q99689 392 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 LBHD1Q9BQE6 289 aaPredicted RBP7.45□□□□□ -1.22
VRK3-220ENST00000600259 TRIM34Q9BYJ4 488 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 SPATC1LQ9H0A9 340 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 TTYH1Q9H313 450 aaPredicted RBP7.45□□□□□ -1.22
VRK3-220ENST00000600259 HOXC10Q9NYD6 342 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 ADAMTS5Q9UNA0 930 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 VCANP13611 3396 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 CDK5RAP2Q96SN8 1893 aa7.45□□□□□ -1.22
VRK3-220ENST00000600259 PRUNE2Q8WUY3 3088 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 TCRBV5S4A2TA0A5A2 114 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 CCER2I3L3R5 266 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 SMIM22K7EJ46 135 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 SEPT4O43236 478 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 CYP2D6P10635 497 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 ERCC3P19447 782 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 DSG3P32926 999 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 ADCYAP1R1P41586 468 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 EPHB4P54760 987 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 MAP3K12Q12852 859 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 LRRC41Q15345 812 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 WDR78Q5VTH9 848 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 ANO1Q5XXA6 986 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 ZKSCAN2Q63HK3 967 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 CEP85Q6P2H3 762 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 DPP9Q86TI2 863 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 ABRAQ8N0Z2 381 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 BADQ92934 168 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 CABP5Q9NP86 173 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 PDLIM7Q9NR12 457 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 IVNS1ABPQ9Y6Y0 642 aa7.44□□□□□ -1.22
VRK3-220ENST00000600259 MYO5AQ9Y4I1 1855 aaKnown RBP7.44□□□□□ -1.22
VRK3-220ENST00000600259 FOCADQ5VW36 1801 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 PDE6AP16499 860 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 SMAD3P84022 425 aaKnown RBP7.43□□□□□ -1.22
VRK3-220ENST00000600259 TLE2Q04725 743 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 OS9Q13438 667 aaPredicted RBP7.43□□□□□ -1.22
VRK3-220ENST00000600259 TMEM132BQ14DG7 1078 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 TRIM60Q495X7 471 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 MB21D1Q8N884 522 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 SLC44A5Q8NCS7 719 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 ATG4CQ96DT6 458 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 DYNLL2Q96FJ2 89 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 MAML3Q96JK9 1138 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 MROH8Q9H579 483 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 CWC22Q9HCG8 908 aaKnown RBP7.43□□□□□ -1.22
VRK3-220ENST00000600259 DCP1AQ9NPI6 582 aaPredicted RBP7.43□□□□□ -1.22
VRK3-220ENST00000600259 PHF24Q9UPV7 400 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 ATP11BQ9Y2G3 1177 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 TMX2Q9Y320 296 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 EYSQ5T1H1 3165 aa7.43□□□□□ -1.22
VRK3-220ENST00000600259 RLFQ13129 1914 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 MAGEB6P1A0A0J9YX57 407 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 PRKAB2O43741 272 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 POLR3DP05423 398 aaPredicted RBP7.42□□□□□ -1.22
VRK3-220ENST00000600259 ZNF865P0CJ78 1059 aaPredicted RBP7.42□□□□□ -1.22
VRK3-220ENST00000600259 AKR1B1P15121 316 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 TAL1P17542 331 aaPredicted RBP7.42□□□□□ -1.22
VRK3-220ENST00000600259 ZNF792Q3KQV3 632 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 SLFNL1Q499Z3 407 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 FAM47AQ5JRC9 791 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 SLC9C2Q5TAH2 1124 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 ZNF697Q5TEC3 545 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 TMEM179Q6ZVK1 233 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 AACSQ86V21 672 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 CLEC10AQ8IUN9 316 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 LCORLQ8N3X6 602 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 REPS2Q8NFH8 660 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.42□□□□□ -1.22
VRK3-220ENST00000600259 SDR42E1Q8WUS8 393 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 FERMT2Q96AC1 680 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 VCPKMTQ9H867 229 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 MCM9Q9NXL9 1143 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 EXOC6BQ9Y2D4 811 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 ZNF532Q9HCE3 1301 aa7.42□□□□□ -1.22
VRK3-220ENST00000600259 MAST2Q6P0Q8 1798 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 KBTBD13C9JR72 458 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 KIAA0355O15063 1070 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 CHGBP05060 677 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 CDK8P49336 464 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 C12orf60Q5U649 245 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 CCSAPQ6IQ19 270 aaPredicted RBP7.41□□□□□ -1.22
VRK3-220ENST00000600259 RIOX2Q8IUF8 465 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 SIRT2Q8IXJ6 389 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 MAFAQ8NHW3 353 aaPredicted RBP7.41□□□□□ -1.22
VRK3-220ENST00000600259 RHPN1Q8TCX5 695 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 MYLIPQ8WY64 445 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 TINF2Q9BSI4 451 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms