RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 SH2D4AQ9H788 454 aa18.04■□□□□ 0.48
TRIM28-205ENST00000595028 ARHGEF10LQ9HCE6 1279 aa18.04■□□□□ 0.48
TRIM28-205ENST00000595028 PLXNB2O15031 1838 aa18.03■□□□□ 0.48
TRIM28-205ENST00000595028 TRIM6-TRIM34B2RNG4 842 aa18.03■□□□□ 0.48
TRIM28-205ENST00000595028 FOXP2O15409 715 aa18.03■□□□□ 0.48
TRIM28-205ENST00000595028 RASA1P20936 1047 aa18.03■□□□□ 0.48
TRIM28-205ENST00000595028 MTFR1Q15390 333 aa18.03■□□□□ 0.48
TRIM28-205ENST00000595028 CATSPERGQ6ZRH7 1159 aa18.03■□□□□ 0.48
TRIM28-205ENST00000595028 SIAH1Q8IUQ4 282 aa18.03■□□□□ 0.48
TRIM28-205ENST00000595028 NAPBQ9H115 298 aa18.03■□□□□ 0.48
TRIM28-205ENST00000595028 RPAP3Q9H6T3 665 aaPredicted RBP18.03■□□□□ 0.48
TRIM28-205ENST00000595028 TXNRD2Q9NNW7 524 aa18.03■□□□□ 0.48
TRIM28-205ENST00000595028 HELLSQ9NRZ9 838 aa18.03■□□□□ 0.48
TRIM28-205ENST00000595028 GABRQQ9UN88 632 aa18.03■□□□□ 0.48
TRIM28-205ENST00000595028 TMX2Q9Y320 296 aa18.03■□□□□ 0.48
TRIM28-205ENST00000595028 MYH4Q9Y623 1939 aa18.02■□□□□ 0.48
TRIM28-205ENST00000595028 A0A0D9SFI3 127 aa18.02■□□□□ 0.48
TRIM28-205ENST00000595028 FLT3LGP49771 235 aa18.02■□□□□ 0.48
TRIM28-205ENST00000595028 STK11IPQ8N1F8 1099 aa18.02■□□□□ 0.48
TRIM28-205ENST00000595028 COA7Q96BR5 231 aa18.02■□□□□ 0.48
TRIM28-205ENST00000595028 LRCH3Q96II8 777 aa18.02■□□□□ 0.48
TRIM28-205ENST00000595028 FAM227BQ96M60 508 aa18.02■□□□□ 0.48
TRIM28-205ENST00000595028 KANSL2Q9H9L4 492 aa18.02■□□□□ 0.48
TRIM28-205ENST00000595028 RBPJLQ9UBG7 517 aa18.02■□□□□ 0.48
TRIM28-205ENST00000595028 PEX10O60683 326 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 GRK4P32298 578 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 ERVK-9P63128 1117 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 ERVK-24P63145 666 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 PPARAQ07869 468 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 POTEEQ6S8J3 1075 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 LBX2Q6XYB7 198 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 UBE2Q1Q7Z7E8 422 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 SLAIN1Q8ND83 568 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 GPRC5AQ8NFJ5 357 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 LPAR1Q92633 364 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 PAGR1Q9BTK6 254 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 HTATIP2Q9BUP3 242 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.01■□□□□ 0.47
TRIM28-205ENST00000595028 VCPKMTQ9H867 229 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 MKNK2Q9HBH9 465 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 ZNF287Q9HBT7 754 aa18.01■□□□□ 0.47
TRIM28-205ENST00000595028 SPDYE16A6NNV3 312 aaPredicted RBP18■□□□□ 0.47
TRIM28-205ENST00000595028 EEF2P13639 858 aaKnown RBP18■□□□□ 0.47
TRIM28-205ENST00000595028 NMIQ13287 307 aaPredicted RBP18■□□□□ 0.47
TRIM28-205ENST00000595028 IRF5Q13568 498 aa18■□□□□ 0.47
TRIM28-205ENST00000595028 KIAA1755Q5JYT7 1200 aa18■□□□□ 0.47
TRIM28-205ENST00000595028 VPS53Q5VIR6 699 aa18■□□□□ 0.47
TRIM28-205ENST00000595028 RILPL2Q969X0 211 aa18■□□□□ 0.47
TRIM28-205ENST00000595028 RABGAP1Q9Y3P9 1069 aa18■□□□□ 0.47
TRIM28-205ENST00000595028 NR2E3Q9Y5X4 410 aa18■□□□□ 0.47
TRIM28-205ENST00000595028 PLIN4Q96Q06 1357 aa18■□□□□ 0.47
TRIM28-205ENST00000595028 A0A1W2PPC1 479 aa17.99■□□□□ 0.47
TRIM28-205ENST00000595028 PRDM1O75626 825 aa17.99■□□□□ 0.47
TRIM28-205ENST00000595028 CNMDO75829 334 aa17.99■□□□□ 0.47
TRIM28-205ENST00000595028 ATP2B2Q01814 1243 aa17.99■□□□□ 0.47
TRIM28-205ENST00000595028 MCMDC2Q4G0Z9 681 aa17.99■□□□□ 0.47
TRIM28-205ENST00000595028 NKX2-3Q8TAU0 364 aa17.99■□□□□ 0.47
TRIM28-205ENST00000595028 TANGO6Q9C0B7 1094 aa17.99■□□□□ 0.47
TRIM28-205ENST00000595028 LAMA4Q16363 1823 aa17.99■□□□□ 0.47
TRIM28-205ENST00000595028 CCDC171Q6TFL3 1326 aa17.98■□□□□ 0.47
TRIM28-205ENST00000595028 IGKV6D-41A0A0C4DH26 115 aa17.98■□□□□ 0.47
TRIM28-205ENST00000595028 WDR46O15213 610 aaKnown RBP17.98■□□□□ 0.47
TRIM28-205ENST00000595028 ADCY3O60266 1144 aa17.98■□□□□ 0.47
TRIM28-205ENST00000595028 SLC3A2P08195 630 aaKnown RBP17.98■□□□□ 0.47
TRIM28-205ENST00000595028 PDE4AP27815 886 aa17.98■□□□□ 0.47
TRIM28-205ENST00000595028 PDE4BQ07343 736 aa17.98■□□□□ 0.47
TRIM28-205ENST00000595028 ZNF589Q86UQ0 364 aaPredicted RBP17.98■□□□□ 0.47
TRIM28-205ENST00000595028 SPICE1Q8N0Z3 855 aa17.98■□□□□ 0.47
TRIM28-205ENST00000595028 PXYLP1Q8TE99 480 aa17.98■□□□□ 0.47
TRIM28-205ENST00000595028 PORCNQ9H237 461 aa17.98■□□□□ 0.47
TRIM28-205ENST00000595028 ZMYM6O95789 1325 aa17.98■□□□□ 0.47
TRIM28-205ENST00000595028 ELNP15502 786 aa17.97■□□□□ 0.47
TRIM28-205ENST00000595028 SDSP20132 328 aa17.97■□□□□ 0.47
TRIM28-205ENST00000595028 MAPK4P31152 587 aa17.97■□□□□ 0.47
TRIM28-205ENST00000595028 GJA8P48165 433 aa17.97■□□□□ 0.47
TRIM28-205ENST00000595028 Q3C1V9 767 aa17.97■□□□□ 0.47
TRIM28-205ENST00000595028 ZNF444Q8N0Y2 327 aaPredicted RBP17.97■□□□□ 0.47
TRIM28-205ENST00000595028 GOPCQ9HD26 462 aa17.97■□□□□ 0.47
TRIM28-205ENST00000595028 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.97■□□□□ 0.47
TRIM28-205ENST00000595028 COL11A1P12107 1806 aaPredicted RBP17.97■□□□□ 0.47
TRIM28-205ENST00000595028 UBXN2AP68543 259 aa17.96■□□□□ 0.47
TRIM28-205ENST00000595028 CCNA1P78396 465 aa17.96■□□□□ 0.47
TRIM28-205ENST00000595028 COG2Q14746 738 aa17.96■□□□□ 0.47
TRIM28-205ENST00000595028 ALX1Q15699 326 aa17.96■□□□□ 0.47
TRIM28-205ENST00000595028 SOCS4Q8WXH5 440 aa17.96■□□□□ 0.47
TRIM28-205ENST00000595028 BTBD7Q9P203 1132 aa17.96■□□□□ 0.47
TRIM28-205ENST00000595028 NYAP2Q9P242 653 aa17.96■□□□□ 0.47
TRIM28-205ENST00000595028 BIN2Q9UBW5 565 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-205ENST00000595028 GJD2Q9UKL4 321 aa17.96■□□□□ 0.47
TRIM28-205ENST00000595028 ZNF236Q9UL36 1845 aa17.95■□□□□ 0.46
TRIM28-205ENST00000595028 FLOT1O75955 427 aa17.95■□□□□ 0.46
TRIM28-205ENST00000595028 INHAP05111 366 aa17.95■□□□□ 0.46
TRIM28-205ENST00000595028 GJB1P08034 283 aa17.95■□□□□ 0.46
TRIM28-205ENST00000595028 CCL5P13501 91 aa17.95■□□□□ 0.46
TRIM28-205ENST00000595028 GPR142Q7Z601 462 aa17.95■□□□□ 0.46
TRIM28-205ENST00000595028 CCAR1Q8IX12 1150 aaKnown RBP17.95■□□□□ 0.46
TRIM28-205ENST00000595028 CEP95Q96GE4 821 aa17.95■□□□□ 0.46
TRIM28-205ENST00000595028 DIAPH3Q9NSV4 1193 aa17.95■□□□□ 0.46
TRIM28-205ENST00000595028 ANAPC4Q9UJX5 808 aa17.95■□□□□ 0.46
TRIM28-205ENST00000595028 HIP1O00291 1037 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms