RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 ZMYND8Q9ULU4 1186 aaPredicted RBP28.88■■■□□ 2.21
LSM4-202ENST00000593564 BMP8BP34820 402 aa28.87■■■□□ 2.21
LSM4-202ENST00000593564 COG2Q14746 738 aa28.87■■■□□ 2.21
LSM4-202ENST00000593564 HOXC10Q9NYD6 342 aa28.87■■■□□ 2.21
LSM4-202ENST00000593564 FLRT1Q9NZU1 646 aa28.87■■■□□ 2.21
LSM4-202ENST00000593564 RCAN3Q9UKA8 241 aa28.87■■■□□ 2.21
LSM4-202ENST00000593564 PRKAB2O43741 272 aa28.86■■■□□ 2.21
LSM4-202ENST00000593564 SLFNL1Q499Z3 407 aa28.86■■■□□ 2.21
LSM4-202ENST00000593564 DYNLL2Q96FJ2 89 aa28.86■■■□□ 2.21
LSM4-202ENST00000593564 TANGO6Q9C0B7 1094 aa28.85■■■□□ 2.21
LSM4-202ENST00000593564 UBE3CQ15386 1083 aa28.84■■■□□ 2.21
LSM4-202ENST00000593564 LPAR1Q92633 364 aa28.84■■■□□ 2.21
LSM4-202ENST00000593564 AKR1B1P15121 316 aa28.83■■■□□ 2.21
LSM4-202ENST00000593564 ATP2B2Q01814 1243 aa28.83■■■□□ 2.21
LSM4-202ENST00000593564 KIAA1755Q5JYT7 1200 aa28.83■■■□□ 2.21
LSM4-202ENST00000593564 C12orf60Q5U649 245 aa28.83■■■□□ 2.21
LSM4-202ENST00000593564 NPLOC4Q8TAT6 608 aa28.83■■■□□ 2.21
LSM4-202ENST00000593564 MOV10L1Q9BXT6 1211 aaKnown RBP28.83■■■□□ 2.21
LSM4-202ENST00000593564 SOX1O00570 391 aaPredicted RBP28.82■■■□□ 2.2
LSM4-202ENST00000593564 IGHA2P01877 340 aa28.82■■■□□ 2.2
LSM4-202ENST00000593564 ICA1Q05084 483 aa28.82■■■□□ 2.2
LSM4-202ENST00000593564 SIAH1Q8IUQ4 282 aa28.82■■■□□ 2.2
LSM4-202ENST00000593564 MB21D1Q8N884 522 aa28.82■■■□□ 2.2
LSM4-202ENST00000593564 SHCBP1Q8NEM2 672 aa28.82■■■□□ 2.2
LSM4-202ENST00000593564 CCDC17Q96LX7 622 aa28.82■■■□□ 2.2
LSM4-202ENST00000593564 LRRCC1Q9C099 1032 aa28.82■■■□□ 2.2
LSM4-202ENST00000593564 SPATC1LQ9H0A9 340 aa28.82■■■□□ 2.2
LSM4-202ENST00000593564 SH2D4AQ9H788 454 aa28.82■■■□□ 2.2
LSM4-202ENST00000593564 ARHGEF10LQ9HCE6 1279 aa28.82■■■□□ 2.2
LSM4-202ENST00000593564 TMX2Q9Y320 296 aa28.82■■■□□ 2.2
LSM4-202ENST00000593564 STRNO43815 780 aa28.81■■■□□ 2.2
LSM4-202ENST00000593564 CHGBP05060 677 aa28.81■■■□□ 2.2
LSM4-202ENST00000593564 SYN1P17600 705 aa28.81■■■□□ 2.2
LSM4-202ENST00000593564 AMOTL1Q8IY63 956 aa28.81■■■□□ 2.2
LSM4-202ENST00000593564 DDX20Q9UHI6 824 aaKnown RBP28.81■■■□□ 2.2
LSM4-202ENST00000593564 USP17L12C9JPN9 530 aa28.8■■■□□ 2.2
LSM4-202ENST00000593564 USP17L21D6R901 530 aa28.8■■■□□ 2.2
LSM4-202ENST00000593564 MSCO60682 206 aa28.8■■■□□ 2.2
LSM4-202ENST00000593564 CDK8P49336 464 aa28.8■■■□□ 2.2
LSM4-202ENST00000593564 C16orf86Q6ZW13 317 aa28.8■■■□□ 2.2
LSM4-202ENST00000593564 CLEC10AQ8IUN9 316 aa28.8■■■□□ 2.2
LSM4-202ENST00000593564 DDRGK1Q96HY6 314 aa28.8■■■□□ 2.2
LSM4-202ENST00000593564 VCPKMTQ9H867 229 aa28.8■■■□□ 2.2
LSM4-202ENST00000593564 A0A0G2JMZ2 1700 aa28.8■■■□□ 2.2
LSM4-202ENST00000593564 RLFQ13129 1914 aa28.79■■■□□ 2.2
LSM4-202ENST00000593564 ZNF236Q9UL36 1845 aa28.79■■■□□ 2.2
LSM4-202ENST00000593564 CYP2D7A0A087X1C5 515 aa28.79■■■□□ 2.2
LSM4-202ENST00000593564 ADORA2AP29274 412 aa28.79■■■□□ 2.2
LSM4-202ENST00000593564 DSG3P32926 999 aa28.79■■■□□ 2.2
LSM4-202ENST00000593564 MAGEA10P43363 369 aaPredicted RBP28.79■■■□□ 2.2
LSM4-202ENST00000593564 C20orf194Q5TEA3 1177 aa28.79■■■□□ 2.2
LSM4-202ENST00000593564 ZSCAN25Q6NSZ9 544 aa28.79■■■□□ 2.2
LSM4-202ENST00000593564 DPP9Q86TI2 863 aa28.79■■■□□ 2.2
LSM4-202ENST00000593564 SMIM22K7EJ46 135 aa28.78■■■□□ 2.2
LSM4-202ENST00000593564 FLOT1O75955 427 aa28.78■■■□□ 2.2
LSM4-202ENST00000593564 ERCC3P19447 782 aa28.78■■■□□ 2.2
LSM4-202ENST00000593564 CYP2C19P33261 490 aa28.78■■■□□ 2.2
LSM4-202ENST00000593564 LRRC26Q2I0M4 334 aa28.78■■■□□ 2.2
LSM4-202ENST00000593564 SPICE1Q8N0Z3 855 aa28.78■■■□□ 2.2
LSM4-202ENST00000593564 LRCH3Q96II8 777 aa28.78■■■□□ 2.2
LSM4-202ENST00000593564 SLC4A4Q9Y6R1 1079 aa28.78■■■□□ 2.2
LSM4-202ENST00000593564 BAZ2AQ9UIF9 1905 aaKnown RBP28.78■■■□□ 2.2
LSM4-202ENST00000593564 MYH8P13535 1937 aa28.77■■■□□ 2.2
LSM4-202ENST00000593564 WDR46O15213 610 aaKnown RBP28.77■■■□□ 2.2
LSM4-202ENST00000593564 CNGA1P29973 690 aa28.77■■■□□ 2.2
LSM4-202ENST00000593564 OLFML2BQ68BL8 750 aa28.77■■■□□ 2.2
LSM4-202ENST00000593564 MROH8Q9H579 483 aa28.77■■■□□ 2.2
LSM4-202ENST00000593564 FRMPD3Q5JV73 1810 aa28.76■■■□□ 2.19
LSM4-202ENST00000593564 SMARCA5O60264 1052 aaPredicted RBP28.76■■■□□ 2.19
LSM4-202ENST00000593564 CYBAP13498 195 aa28.76■■■□□ 2.19
LSM4-202ENST00000593564 TRPV1Q8NER1 839 aa28.76■■■□□ 2.19
LSM4-202ENST00000593564 ATG4CQ96DT6 458 aa28.76■■■□□ 2.19
LSM4-202ENST00000593564 PUS7LQ9H0K6 701 aaKnown RBP28.76■■■□□ 2.19
LSM4-202ENST00000593564 MYH7P12883 1935 aa28.75■■■□□ 2.19
LSM4-202ENST00000593564 CTR9Q6PD62 1173 aa28.75■■■□□ 2.19
LSM4-202ENST00000593564 ABRAQ8N0Z2 381 aa28.75■■■□□ 2.19
LSM4-202ENST00000593564 ECHDC1Q9NTX5 307 aa28.75■■■□□ 2.19
LSM4-202ENST00000593564 COBLO75128 1261 aa28.74■■■□□ 2.19
LSM4-202ENST00000593564 KANSL2Q9H9L4 492 aa28.74■■■□□ 2.19
LSM4-202ENST00000593564 SLC5A4Q9NY91 659 aa28.74■■■□□ 2.19
LSM4-202ENST00000593564 DNM1LO00429 736 aa28.73■■■□□ 2.19
LSM4-202ENST00000593564 EEF2P13639 858 aaKnown RBP28.73■■■□□ 2.19
LSM4-202ENST00000593564 PLS1Q14651 629 aa28.73■■■□□ 2.19
LSM4-202ENST00000593564 NCAPG2Q86XI2 1143 aa28.73■■■□□ 2.19
LSM4-202ENST00000593564 TDHQ8IZJ6 230 aa28.73■■■□□ 2.19
LSM4-202ENST00000593564 SENP6Q9GZR1 1112 aaPredicted RBP28.73■■■□□ 2.19
LSM4-202ENST00000593564 ARPP21Q9UBL0 812 aaPredicted RBP28.73■■■□□ 2.19
LSM4-202ENST00000593564 LRIT3Q3SXY7 679 aa28.72■■■□□ 2.19
LSM4-202ENST00000593564 GPR153Q6NV75 609 aa28.72■■■□□ 2.19
LSM4-202ENST00000593564 UBE2OQ9C0C9 1292 aaKnown RBP28.72■■■□□ 2.19
LSM4-202ENST00000593564 ADAMTS5Q9UNA0 930 aa28.72■■■□□ 2.19
LSM4-202ENST00000593564 DNAH12Q6ZR08 3092 aa28.72■■■□□ 2.19
LSM4-202ENST00000593564 TMEM132BQ14DG7 1078 aa28.71■■■□□ 2.19
LSM4-202ENST00000593564 STRBPQ96SI9 672 aaKnown RBP28.71■■■□□ 2.19
LSM4-202ENST00000593564 SLC25A27O95847 323 aa28.7■■■□□ 2.18
LSM4-202ENST00000593564 SBK1Q52WX2 424 aa28.7■■■□□ 2.18
LSM4-202ENST00000593564 GOPCQ9HD26 462 aa28.7■■■□□ 2.18
LSM4-202ENST00000593564 FCER1AP12319 257 aa28.69■■■□□ 2.18
LSM4-202ENST00000593564 GIMAP6Q6P9H5 292 aa28.69■■■□□ 2.18
LSM4-202ENST00000593564 SAMD1Q6SPF0 538 aaPredicted RBP28.69■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms