RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 SDR42E1Q8WUS8 393 aa14.36□□□□□ -0.11
LIG3-209ENST00000586435 DNAJC2Q99543 621 aaKnown RBP14.36□□□□□ -0.11
LIG3-209ENST00000586435 HOXC10Q9NYD6 342 aa14.36□□□□□ -0.11
LIG3-209ENST00000586435 ZNFX1Q9P2E3 1918 aaKnown RBP14.36□□□□□ -0.11
LIG3-209ENST00000586435 COL11A1P12107 1806 aaPredicted RBP14.36□□□□□ -0.11
LIG3-209ENST00000586435 STRNO43815 780 aa14.35□□□□□ -0.11
LIG3-209ENST00000586435 EVX2Q03828 476 aa14.35□□□□□ -0.11
LIG3-209ENST00000586435 SIRT2Q8IXJ6 389 aa14.35□□□□□ -0.11
LIG3-209ENST00000586435 MB21D1Q8N884 522 aa14.35□□□□□ -0.11
LIG3-209ENST00000586435 NPLOC4Q8TAT6 608 aa14.35□□□□□ -0.11
LIG3-209ENST00000586435 LPAR1Q92633 364 aa14.35□□□□□ -0.11
LIG3-209ENST00000586435 ATP8A2Q9NTI2 1148 aa14.35□□□□□ -0.11
LIG3-209ENST00000586435 ZBTB40Q9NUA8 1239 aa14.35□□□□□ -0.11
LIG3-209ENST00000586435 DDX20Q9UHI6 824 aaKnown RBP14.35□□□□□ -0.11
LIG3-209ENST00000586435 GREB1LQ9C091 1923 aaPredicted RBP14.35□□□□□ -0.11
LIG3-209ENST00000586435 LTBP2Q14767 1821 aa14.34□□□□□ -0.11
LIG3-209ENST00000586435 MPHOSPH10O00566 681 aaKnown RBP14.34□□□□□ -0.11
LIG3-209ENST00000586435 CYBAP13498 195 aa14.34□□□□□ -0.11
LIG3-209ENST00000586435 ADD2P35612 726 aa14.34□□□□□ -0.11
LIG3-209ENST00000586435 ATP2B2Q01814 1243 aa14.34□□□□□ -0.11
LIG3-209ENST00000586435 LRRC26Q2I0M4 334 aa14.34□□□□□ -0.11
LIG3-209ENST00000586435 OLFML2BQ68BL8 750 aa14.34□□□□□ -0.11
LIG3-209ENST00000586435 MOV10L1Q9BXT6 1211 aaKnown RBP14.34□□□□□ -0.11
LIG3-209ENST00000586435 SPATC1LQ9H0A9 340 aa14.34□□□□□ -0.11
LIG3-209ENST00000586435 CHMP4BQ9H444 224 aaKnown RBP14.34□□□□□ -0.11
LIG3-209ENST00000586435 PAG1Q9NWQ8 432 aa14.34□□□□□ -0.11
LIG3-209ENST00000586435 DNM1LO00429 736 aa14.33□□□□□ -0.12
LIG3-209ENST00000586435 CYP2D6P10635 497 aa14.33□□□□□ -0.12
LIG3-209ENST00000586435 ATP5JP18859 108 aa14.33□□□□□ -0.12
LIG3-209ENST00000586435 SLC44A5Q8NCS7 719 aa14.33□□□□□ -0.12
LIG3-209ENST00000586435 CCDC17Q96LX7 622 aa14.33□□□□□ -0.12
LIG3-209ENST00000586435 TANGO6Q9C0B7 1094 aa14.33□□□□□ -0.12
LIG3-209ENST00000586435 UBE2OQ9C0C9 1292 aaKnown RBP14.33□□□□□ -0.12
LIG3-209ENST00000586435 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.33□□□□□ -0.12
LIG3-209ENST00000586435 SH2D4AQ9H788 454 aa14.33□□□□□ -0.12
LIG3-209ENST00000586435 ARMT1Q9H993 441 aa14.33□□□□□ -0.12
LIG3-209ENST00000586435 ARHGEF10LQ9HCE6 1279 aa14.33□□□□□ -0.12
LIG3-209ENST00000586435 TMX2Q9Y320 296 aa14.33□□□□□ -0.12
LIG3-209ENST00000586435 PLXNA1Q9UIW2 1896 aa14.33□□□□□ -0.12
LIG3-209ENST00000586435 APBB1O00213 710 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 MBD4O95243 580 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 ADORA2AP29274 412 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 DSG3P32926 999 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 CYP2C19P33261 490 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 ICA1Q05084 483 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 UBE3CQ15386 1083 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 DPP9Q86TI2 863 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 ABRAQ8N0Z2 381 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 TRPV1Q8NER1 839 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 HAUS7Q99871 368 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 VCPKMTQ9H867 229 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 COG6Q9Y2V7 657 aa14.32□□□□□ -0.12
LIG3-209ENST00000586435 WDR46O15213 610 aaKnown RBP14.31□□□□□ -0.12
LIG3-209ENST00000586435 PRKAB2O43741 272 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 AKR1B1P15121 316 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 ERCC3P19447 782 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 CNGA1P29973 690 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 KIAA1755Q5JYT7 1200 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 C12orf60Q5U649 245 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 DIEXFQ68CQ4 756 aaKnown RBP14.31□□□□□ -0.12
LIG3-209ENST00000586435 C16orf86Q6ZW13 317 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 SIAH1Q8IUQ4 282 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 AMOTL1Q8IY63 956 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 DYNLL2Q96FJ2 89 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 SENP6Q9GZR1 1112 aaPredicted RBP14.31□□□□□ -0.12
LIG3-209ENST00000586435 BOLA2Q9H3K6 86 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 MROH8Q9H579 483 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 SLC5A4Q9NY91 659 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 SMCHD1A6NHR9 2005 aa14.31□□□□□ -0.12
LIG3-209ENST00000586435 COL6A3P12111 3177 aa14.3□□□□□ -0.12
LIG3-209ENST00000586435 FLOT1O75955 427 aa14.3□□□□□ -0.12
LIG3-209ENST00000586435 CDK8P49336 464 aa14.3□□□□□ -0.12
LIG3-209ENST00000586435 CLEC10AQ8IUN9 316 aa14.3□□□□□ -0.12
LIG3-209ENST00000586435 SEPT4O43236 478 aa14.29□□□□□ -0.12
LIG3-209ENST00000586435 COBLO75128 1261 aa14.29□□□□□ -0.12
LIG3-209ENST00000586435 SLFNL1Q499Z3 407 aa14.29□□□□□ -0.12
LIG3-209ENST00000586435 ZSCAN25Q6NSZ9 544 aa14.29□□□□□ -0.12
LIG3-209ENST00000586435 DEFB123Q8N688 67 aa14.29□□□□□ -0.12
LIG3-209ENST00000586435 ARRDC4Q8NCT1 418 aa14.29□□□□□ -0.12
LIG3-209ENST00000586435 ATG4CQ96DT6 458 aa14.29□□□□□ -0.12
LIG3-209ENST00000586435 DDRGK1Q96HY6 314 aa14.29□□□□□ -0.12
LIG3-209ENST00000586435 ADAMTS5Q9UNA0 930 aa14.29□□□□□ -0.12
LIG3-209ENST00000586435 USP17L12C9JPN9 530 aa14.28□□□□□ -0.12
LIG3-209ENST00000586435 USP17L21D6R901 530 aa14.28□□□□□ -0.12
LIG3-209ENST00000586435 SLC25A27O95847 323 aa14.28□□□□□ -0.12
LIG3-209ENST00000586435 MDM2Q00987 491 aaPredicted RBP14.28□□□□□ -0.12
LIG3-209ENST00000586435 NCAPG2Q86XI2 1143 aa14.28□□□□□ -0.12
LIG3-209ENST00000586435 SPICE1Q8N0Z3 855 aa14.28□□□□□ -0.12
LIG3-209ENST00000586435 SLC17A8Q8NDX2 589 aa14.28□□□□□ -0.12
LIG3-209ENST00000586435 MAML3Q96JK9 1138 aa14.28□□□□□ -0.12
LIG3-209ENST00000586435 ROBO3Q96MS0 1386 aa14.28□□□□□ -0.12
LIG3-209ENST00000586435 KANSL2Q9H9L4 492 aa14.28□□□□□ -0.12
LIG3-209ENST00000586435 ARPP21Q9UBL0 812 aaPredicted RBP14.28□□□□□ -0.12
LIG3-209ENST00000586435 NRBP1Q9UHY1 535 aa14.28□□□□□ -0.12
LIG3-209ENST00000586435 MYH4Q9Y623 1939 aa14.28□□□□□ -0.12
LIG3-209ENST00000586435 CYP2D7A0A087X1C5 515 aa14.27□□□□□ -0.13
LIG3-209ENST00000586435 KBTBD13C9JR72 458 aa14.27□□□□□ -0.13
LIG3-209ENST00000586435 SMIM22K7EJ46 135 aa14.27□□□□□ -0.13
LIG3-209ENST00000586435 FCER1AP12319 257 aa14.27□□□□□ -0.13
LIG3-209ENST00000586435 RTP1P59025 263 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms