RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 USP17L2Q6R6M4 530 aa29.28■■■□□ 2.28
SHMT1-207ENST00000580002 CDCA5Q96FF9 252 aa29.28■■■□□ 2.28
SHMT1-207ENST00000580002 NYAP2Q9P242 653 aa29.28■■■□□ 2.28
SHMT1-207ENST00000580002 FOSBP53539 338 aa29.27■■■□□ 2.28
SHMT1-207ENST00000580002 SLC35G1Q2M3R5 365 aa29.27■■■□□ 2.28
SHMT1-207ENST00000580002 WRNIP1Q96S55 665 aa29.27■■■□□ 2.28
SHMT1-207ENST00000580002 LLPHQ9BRT6 129 aaKnown RBP29.27■■■□□ 2.28
SHMT1-207ENST00000580002 CPVLQ9H3G5 476 aa29.27■■■□□ 2.28
SHMT1-207ENST00000580002 MAD2L2Q9UI95 211 aa29.27■■■□□ 2.28
SHMT1-207ENST00000580002 ZNF112Q9UJU3 913 aa29.27■■■□□ 2.28
SHMT1-207ENST00000580002 TRAF5O00463 557 aa29.26■■■□□ 2.28
SHMT1-207ENST00000580002 SUPT20HL1Q3ZLR7 823 aa29.26■■■□□ 2.28
SHMT1-207ENST00000580002 DCAF15Q66K64 600 aa29.26■■■□□ 2.28
SHMT1-207ENST00000580002 MOB2Q70IA6 237 aa29.26■■■□□ 2.28
SHMT1-207ENST00000580002 SRBD1Q8N5C6 995 aaKnown RBP29.26■■■□□ 2.28
SHMT1-207ENST00000580002 hCG_1642624A0A1W2PR95 340 aa29.26■■■□□ 2.27
SHMT1-207ENST00000580002 RCAN1P53805 252 aa29.26■■■□□ 2.27
SHMT1-207ENST00000580002 GRM4Q14833 912 aa29.26■■■□□ 2.27
SHMT1-207ENST00000580002 FOXD4L5Q5VV16 416 aaPredicted RBP29.26■■■□□ 2.27
SHMT1-207ENST00000580002 FOXD4L4Q8WXT5 416 aaPredicted RBP29.26■■■□□ 2.27
SHMT1-207ENST00000580002 MKL1Q969V6 931 aa29.26■■■□□ 2.27
SHMT1-207ENST00000580002 KLRG1Q96E93 195 aa29.26■■■□□ 2.27
SHMT1-207ENST00000580002 ZBTB4Q9P1Z0 1013 aaPredicted RBP29.26■■■□□ 2.27
SHMT1-207ENST00000580002 ZDHHC9Q9Y397 364 aa29.26■■■□□ 2.27
SHMT1-207ENST00000580002 FUT2Q10981 343 aa29.25■■■□□ 2.27
SHMT1-207ENST00000580002 KIAA1755Q5JYT7 1200 aa29.25■■■□□ 2.27
SHMT1-207ENST00000580002 AIFM3Q96NN9 605 aa29.25■■■□□ 2.27
SHMT1-207ENST00000580002 FRMPD2Q68DX3 1309 aaPredicted RBP29.24■■■□□ 2.27
SHMT1-207ENST00000580002 RAD21O60216 631 aa29.24■■■□□ 2.27
SHMT1-207ENST00000580002 CALM1P0DP23 149 aa29.24■■■□□ 2.27
SHMT1-207ENST00000580002 CALM2P0DP24 149 aa29.24■■■□□ 2.27
SHMT1-207ENST00000580002 CALM3P0DP25 149 aa29.24■■■□□ 2.27
SHMT1-207ENST00000580002 PDHBP11177 359 aa29.24■■■□□ 2.27
SHMT1-207ENST00000580002 GJB4Q9NTQ9 266 aa29.24■■■□□ 2.27
SHMT1-207ENST00000580002 DHX16O60231 1041 aaKnown RBP29.24■■■□□ 2.27
SHMT1-207ENST00000580002 CTNND1O60716 968 aaKnown RBP29.24■■■□□ 2.27
SHMT1-207ENST00000580002 TMTC3Q6ZXV5 915 aa29.24■■■□□ 2.27
SHMT1-207ENST00000580002 CDC37L1Q7L3B6 337 aa29.24■■■□□ 2.27
SHMT1-207ENST00000580002 CTCFLQ8NI51 663 aaPredicted RBP29.24■■■□□ 2.27
SHMT1-207ENST00000580002 CHMP5Q9NZZ3 219 aa29.24■■■□□ 2.27
SHMT1-207ENST00000580002 IFNAR1P17181 557 aa29.23■■■□□ 2.27
SHMT1-207ENST00000580002 SYT1P21579 422 aa29.23■■■□□ 2.27
SHMT1-207ENST00000580002 PIBF1Q8WXW3 757 aa29.23■■■□□ 2.27
SHMT1-207ENST00000580002 SLC26A6Q9BXS9 759 aa29.23■■■□□ 2.27
SHMT1-207ENST00000580002 ORC3Q9UBD5 711 aaPredicted RBP29.23■■■□□ 2.27
SHMT1-207ENST00000580002 MYH4Q9Y623 1939 aa29.22■■■□□ 2.27
SHMT1-207ENST00000580002 PALM3A6NDB9 673 aaPredicted RBP29.22■■■□□ 2.27
SHMT1-207ENST00000580002 BAZ2BQ9UIF8 2168 aaKnown RBP29.21■■■□□ 2.27
SHMT1-207ENST00000580002 ASNSP08243 561 aa29.21■■■□□ 2.27
SHMT1-207ENST00000580002 DGKZQ13574 1117 aa29.21■■■□□ 2.27
SHMT1-207ENST00000580002 ZYXQ15942 572 aaKnown RBP29.21■■■□□ 2.27
SHMT1-207ENST00000580002 OTUD7BQ6GQQ9 843 aa29.21■■■□□ 2.27
SHMT1-207ENST00000580002 TTBK2Q6IQ55 1244 aa29.21■■■□□ 2.27
SHMT1-207ENST00000580002 DDX55Q8NHQ9 600 aaKnown RBP eCLIP29.21■■■□□ 2.27
SHMT1-207ENST00000580002 HOOK2Q96ED9 719 aa29.21■■■□□ 2.27
SHMT1-207ENST00000580002 NUP88Q99567 741 aaPredicted RBP29.21■■■□□ 2.27
SHMT1-207ENST00000580002 UBA5Q9GZZ9 404 aa29.21■■■□□ 2.27
SHMT1-207ENST00000580002 GPCPD1Q9NPB8 672 aa29.21■■■□□ 2.27
SHMT1-207ENST00000580002 F5H6K3 240 aa29.2■■■□□ 2.26
SHMT1-207ENST00000580002 SNHG28P0DPA3 235 aa29.2■■■□□ 2.26
SHMT1-207ENST00000580002 KLRC3Q07444 240 aa29.2■■■□□ 2.26
SHMT1-207ENST00000580002 LARP1BQ659C4 914 aaKnown RBP29.2■■■□□ 2.26
SHMT1-207ENST00000580002 KCTD1Q719H9 257 aa29.2■■■□□ 2.26
SHMT1-207ENST00000580002 SPICE1Q8N0Z3 855 aa29.2■■■□□ 2.26
SHMT1-207ENST00000580002 RBM28Q9NW13 759 aaKnown RBP29.2■■■□□ 2.26
SHMT1-207ENST00000580002 CCDC196A0A1B0GTZ2 297 aa29.19■■■□□ 2.26
SHMT1-207ENST00000580002 CYTH3O43739 400 aa29.19■■■□□ 2.26
SHMT1-207ENST00000580002 FMNL1O95466 1100 aaPredicted RBP29.19■■■□□ 2.26
SHMT1-207ENST00000580002 PARP1P09874 1014 aaKnown RBP29.19■■■□□ 2.26
SHMT1-207ENST00000580002 SLFN13Q68D06 897 aa29.19■■■□□ 2.26
SHMT1-207ENST00000580002 PPP1R3FQ6ZSY5 799 aaPredicted RBP29.19■■■□□ 2.26
SHMT1-207ENST00000580002 SCYL3Q8IZE3 742 aa29.19■■■□□ 2.26
SHMT1-207ENST00000580002 FAM184AQ8NB25 1140 aa29.19■■■□□ 2.26
SHMT1-207ENST00000580002 MAP3K14Q99558 947 aa29.19■■■□□ 2.26
SHMT1-207ENST00000580002 V9GY48 417 aaPredicted RBP29.19■■■□□ 2.26
SHMT1-207ENST00000580002 KLRF2D3W0D1 207 aa29.18■■■□□ 2.26
SHMT1-207ENST00000580002 SSRP1Q08945 709 aaKnown RBP29.18■■■□□ 2.26
SHMT1-207ENST00000580002 TMX2Q9Y320 296 aa29.18■■■□□ 2.26
SHMT1-207ENST00000580002 CNTNAP5Q8WYK1 1306 aa29.18■■■□□ 2.26
SHMT1-207ENST00000580002 NDUFB10O96000 172 aa29.18■■■□□ 2.26
SHMT1-207ENST00000580002 HMGN5P82970 282 aaKnown RBP29.18■■■□□ 2.26
SHMT1-207ENST00000580002 GUCY1B3Q02153 619 aa29.18■■■□□ 2.26
SHMT1-207ENST00000580002 CPLX2Q6PUV4 134 aaKnown RBP29.18■■■□□ 2.26
SHMT1-207ENST00000580002 CIZ1Q9ULV3 898 aaPredicted RBP29.18■■■□□ 2.26
SHMT1-207ENST00000580002 ATAD5Q96QE3 1844 aa29.18■■■□□ 2.26
SHMT1-207ENST00000580002 KIF5BP33176 963 aa29.17■■■□□ 2.26
SHMT1-207ENST00000580002 PPP2R5BQ15173 497 aa29.17■■■□□ 2.26
SHMT1-207ENST00000580002 CHAMP1Q96JM3 812 aa29.17■■■□□ 2.26
SHMT1-207ENST00000580002 STX6O43752 255 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 CDKL5O76039 1030 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 PTPRAP18433 802 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 ZNF543Q08ER8 600 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 PKN1Q16512 942 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 CNKSR2Q8WXI2 1034 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 ZNF408Q9H9D4 720 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 ARHGEF10LQ9HCE6 1279 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 MTMR6Q9Y217 621 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 SLC16A2P36021 539 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 MAP3K9P80192 1104 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 VGLL4Q14135 290 aa29.16■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms