RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 TTC6Q86TZ1 520 aa23.34■■□□□ 1.33
NUP88-203ENST00000572019 AACSQ86V21 672 aa23.34■■□□□ 1.33
NUP88-203ENST00000572019 DNM1LO00429 736 aa23.33■■□□□ 1.33
NUP88-203ENST00000572019 COBLO75128 1261 aa23.33■■□□□ 1.33
NUP88-203ENST00000572019 ADORA2AP29274 412 aa23.33■■□□□ 1.33
NUP88-203ENST00000572019 MAP3K12Q12852 859 aa23.33■■□□□ 1.33
NUP88-203ENST00000572019 SLFNL1Q499Z3 407 aa23.33■■□□□ 1.33
NUP88-203ENST00000572019 COL25A1Q9BXS0 654 aaPredicted RBP23.33■■□□□ 1.33
NUP88-203ENST00000572019 IVNS1ABPQ9Y6Y0 642 aa23.33■■□□□ 1.33
NUP88-203ENST00000572019 PRAMEF19Q5SWL8 479 aa23.32■■□□□ 1.32
NUP88-203ENST00000572019 SDR42E1Q8WUS8 393 aa23.32■■□□□ 1.32
NUP88-203ENST00000572019 IL1RAPL2Q9NP60 686 aa23.32■■□□□ 1.32
NUP88-203ENST00000572019 CABP5Q9NP86 173 aa23.32■■□□□ 1.32
NUP88-203ENST00000572019 PLXNA1Q9UIW2 1896 aa23.31■■□□□ 1.32
NUP88-203ENST00000572019 MAGEB6P1A0A0J9YX57 407 aa23.31■■□□□ 1.32
NUP88-203ENST00000572019 POLR3DP05423 398 aaPredicted RBP23.31■■□□□ 1.32
NUP88-203ENST00000572019 PDE6AP16499 860 aa23.31■■□□□ 1.32
NUP88-203ENST00000572019 C9orf50Q5SZB4 431 aa23.31■■□□□ 1.32
NUP88-203ENST00000572019 SIAH1Q8IUQ4 282 aa23.31■■□□□ 1.32
NUP88-203ENST00000572019 LBHD1Q9BQE6 289 aaPredicted RBP23.31■■□□□ 1.32
NUP88-203ENST00000572019 ATP11BQ9Y2G3 1177 aa23.31■■□□□ 1.32
NUP88-203ENST00000572019 MPHOSPH10O00566 681 aaKnown RBP23.3■■□□□ 1.32
NUP88-203ENST00000572019 ERCC3P19447 782 aa23.3■■□□□ 1.32
NUP88-203ENST00000572019 CERS3Q8IU89 383 aa23.3■■□□□ 1.32
NUP88-203ENST00000572019 LCORLQ8N3X6 602 aa23.3■■□□□ 1.32
NUP88-203ENST00000572019 DYNLL2Q96FJ2 89 aa23.3■■□□□ 1.32
NUP88-203ENST00000572019 TANGO6Q9C0B7 1094 aa23.3■■□□□ 1.32
NUP88-203ENST00000572019 SPATC1LQ9H0A9 340 aa23.3■■□□□ 1.32
NUP88-203ENST00000572019 MCM9Q9NXL9 1143 aa23.3■■□□□ 1.32
NUP88-203ENST00000572019 TCRBV5S4A2TA0A5A2 114 aa23.29■■□□□ 1.32
NUP88-203ENST00000572019 MSCO60682 206 aa23.29■■□□□ 1.32
NUP88-203ENST00000572019 COG2Q14746 738 aa23.29■■□□□ 1.32
NUP88-203ENST00000572019 SHHQ15465 462 aa23.29■■□□□ 1.32
NUP88-203ENST00000572019 DPP9Q86TI2 863 aa23.29■■□□□ 1.32
NUP88-203ENST00000572019 FTSJ3Q8IY81 847 aaKnown RBP23.29■■□□□ 1.32
NUP88-203ENST00000572019 CDH23Q9H251 3354 aa23.29■■□□□ 1.32
NUP88-203ENST00000572019 CHGBP05060 677 aa23.28■■□□□ 1.32
NUP88-203ENST00000572019 TRIM60Q495X7 471 aa23.28■■□□□ 1.32
NUP88-203ENST00000572019 SLC9C2Q5TAH2 1124 aa23.28■■□□□ 1.32
NUP88-203ENST00000572019 OLFML2BQ68BL8 750 aa23.28■■□□□ 1.32
NUP88-203ENST00000572019 FAM109BQ6ICB4 259 aaPredicted RBP23.28■■□□□ 1.32
NUP88-203ENST00000572019 SLC39A5Q6ZMH5 540 aa23.28■■□□□ 1.32
NUP88-203ENST00000572019 SH3RF1Q7Z6J0 888 aa23.28■■□□□ 1.32
NUP88-203ENST00000572019 SPICE1Q8N0Z3 855 aa23.28■■□□□ 1.32
NUP88-203ENST00000572019 ATG4CQ96DT6 458 aa23.28■■□□□ 1.32
NUP88-203ENST00000572019 DCP1AQ9NPI6 582 aaPredicted RBP23.28■■□□□ 1.32
NUP88-203ENST00000572019 VCANP13611 3396 aa23.28■■□□□ 1.32
NUP88-203ENST00000572019 ZNF532Q9HCE3 1301 aa23.28■■□□□ 1.32
NUP88-203ENST00000572019 MYCNP04198 464 aaPredicted RBP23.27■■□□□ 1.32
NUP88-203ENST00000572019 AKR1B1P15121 316 aa23.27■■□□□ 1.32
NUP88-203ENST00000572019 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.27■■□□□ 1.32
NUP88-203ENST00000572019 MYH7P12883 1935 aa23.26■■□□□ 1.31
NUP88-203ENST00000572019 PRUNE2Q8WUY3 3088 aa23.26■■□□□ 1.31
NUP88-203ENST00000572019 PRKAB2O43741 272 aa23.26■■□□□ 1.31
NUP88-203ENST00000572019 FAM47AQ5JRC9 791 aa23.26■■□□□ 1.31
NUP88-203ENST00000572019 PANK1Q8TE04 598 aa23.26■■□□□ 1.31
NUP88-203ENST00000572019 BADQ92934 168 aa23.26■■□□□ 1.31
NUP88-203ENST00000572019 FERMT2Q96AC1 680 aa23.26■■□□□ 1.31
NUP88-203ENST00000572019 PRDM5Q9NQX1 630 aaPredicted RBP23.26■■□□□ 1.31
NUP88-203ENST00000572019 CYP2D7A0A087X1C5 515 aa23.25■■□□□ 1.31
NUP88-203ENST00000572019 TRIM43BA6NCK2 446 aa23.25■■□□□ 1.31
NUP88-203ENST00000572019 GOLIM4O00461 696 aa23.25■■□□□ 1.31
NUP88-203ENST00000572019 DSG3P32926 999 aa23.25■■□□□ 1.31
NUP88-203ENST00000572019 ADCYAP1R1P41586 468 aa23.25■■□□□ 1.31
NUP88-203ENST00000572019 PLS1Q14651 629 aa23.25■■□□□ 1.31
NUP88-203ENST00000572019 SNX17Q15036 470 aa23.25■■□□□ 1.31
NUP88-203ENST00000572019 SAMD1Q6SPF0 538 aaPredicted RBP23.25■■□□□ 1.31
NUP88-203ENST00000572019 SHCBP1Q8NEM2 672 aa23.25■■□□□ 1.31
NUP88-203ENST00000572019 RHPN1Q8TCX5 695 aa23.25■■□□□ 1.31
NUP88-203ENST00000572019 TRIM43Q96BQ3 446 aaPredicted RBP23.25■■□□□ 1.31
NUP88-203ENST00000572019 CRNKL1Q9BZJ0 848 aaKnown RBP23.25■■□□□ 1.31
NUP88-203ENST00000572019 ARMT1Q9H993 441 aa23.25■■□□□ 1.31
NUP88-203ENST00000572019 PDLIM7Q9NR12 457 aa23.25■■□□□ 1.31
NUP88-203ENST00000572019 APBB1O00213 710 aa23.24■■□□□ 1.31
NUP88-203ENST00000572019 SEPT4O43236 478 aa23.24■■□□□ 1.31
NUP88-203ENST00000572019 ITGB8P26012 769 aa23.24■■□□□ 1.31
NUP88-203ENST00000572019 LRRC41Q15345 812 aa23.24■■□□□ 1.31
NUP88-203ENST00000572019 NCAPG2Q86XI2 1143 aa23.24■■□□□ 1.31
NUP88-203ENST00000572019 MAML3Q96JK9 1138 aa23.24■■□□□ 1.31
NUP88-203ENST00000572019 DNAJC2Q99543 621 aaKnown RBP23.24■■□□□ 1.31
NUP88-203ENST00000572019 BCL11AQ9H165 835 aa23.24■■□□□ 1.31
NUP88-203ENST00000572019 HOXC10Q9NYD6 342 aa23.24■■□□□ 1.31
NUP88-203ENST00000572019 STRNO43815 780 aa23.23■■□□□ 1.31
NUP88-203ENST00000572019 FLOT1O75955 427 aa23.23■■□□□ 1.31
NUP88-203ENST00000572019 TMEM179Q6ZVK1 233 aa23.23■■□□□ 1.31
NUP88-203ENST00000572019 ARRDC4Q8NCT1 418 aa23.23■■□□□ 1.31
NUP88-203ENST00000572019 CDX2Q99626 313 aaPredicted RBP23.23■■□□□ 1.31
NUP88-203ENST00000572019 FBXO28Q9NVF7 368 aa23.23■■□□□ 1.31
NUP88-203ENST00000572019 PRKAG2Q9UGJ0 569 aa23.23■■□□□ 1.31
NUP88-203ENST00000572019 KBTBD13C9JR72 458 aa23.22■■□□□ 1.31
NUP88-203ENST00000572019 TMEM132BQ14DG7 1078 aa23.22■■□□□ 1.31
NUP88-203ENST00000572019 ZNF697Q5TEC3 545 aa23.22■■□□□ 1.31
NUP88-203ENST00000572019 ERC1Q8IUD2 1116 aa23.22■■□□□ 1.31
NUP88-203ENST00000572019 LENG1Q96BZ8 264 aaPredicted RBP23.22■■□□□ 1.31
NUP88-203ENST00000572019 TTYH1Q9H313 450 aaPredicted RBP23.22■■□□□ 1.31
NUP88-203ENST00000572019 PGK2P07205 417 aa23.21■■□□□ 1.31
NUP88-203ENST00000572019 TAL1P17542 331 aaPredicted RBP23.21■■□□□ 1.31
NUP88-203ENST00000572019 EPHB4P54760 987 aa23.21■■□□□ 1.31
NUP88-203ENST00000572019 TMED8Q6PL24 325 aaPredicted RBP23.21■■□□□ 1.31
NUP88-203ENST00000572019 VCPKMTQ9H867 229 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms